Claim · model-written summary
GWAS identified significant associations with a gene encoding a small secreted protein.
- Taxon
- barley
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Hordeum vulgaree0 - Gene
- a gene encoding a small secreted proteine5
- Outcome
- significant associationse5
Not reportedDirection
Verbatim
e0“Pyrenophora teres f. teres is the causal agent of net form net blotch of barley”
e5“GWAS analysis identified significant associations with a gene encoding a small secreted protein”
Title
Genomic and Molecular Characterization of Pyrenphora teres f. teres
Nathan A. Wyatt NDSU Repository (North Dakota State University) 2019
Other claims from this paper (8)
- Observation The five P. teres f. teres isolates show a two-speed genome architecture with core and accessory compartments.
- Observation Accessory genomic compartments cluster in sub-telomeric regions of the P. teres f. teres genome.
- Association A majority of previously identified QTL for avirulence/virulence are spanned by the accessory genomic regions.
- Observation QTL analysis identified a locus extending off the end of P. teres f. teres chromosome 5.
- Observation A candidate gene for the previously mapped AvrHar was identified.
- Intervention effect Disrupting AvrHar in isolate 15A did not change the phenotype.
- Intervention effect Disrupting the 0-1 allele caused a complete loss of pathogenicity.
- Method / resource The reference isolate 0-1 was sequenced and assembled into 12 chromosomes, giving the first finished genome of P. teres f. teres.