(A) alternata 4 claims

Interactor role: pathogen

Literal values, not normalised. 183,098 distinct spellings cover 1,706,259 claims; only letter case and spacing are merged, so “maize”, “corn” and “Zea mays L.” are three separate entries here. The By interacting organism view merges spellings of one organism through NCBI Taxonomy.

4 claims

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Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Three GLPs (BjuGLP06, BjuGLP23, BjuGLP34) are upregulated in B. juncea infected with Alternaria alternata.

Taxon: B. junceaBrassica junceae1
Treatment: infectede3
Interactor: (A) alternatae3pathogen
Gene: BjuGLP06, BjuGLP23, BjuGLP34e2
Outcome: expressione2
Direction: upregulatede2

Not reportedComparator

Verbatim

e1
“We have identified 102 GLPs in B. juncea, 51 in B. nigra and 48 in B. rapa using in-silico tools”
✓ located verbatim in the source · abstract, characters 635–731

e2
“RT-qPCR analysis in (B) juncea revealed that the expression of 5 GLPs (BjuGLP06, BjuGLP23, BjuGLP34, BjuGLP70, and BjuGLP97) was upregulated”
✓ located verbatim in the source · abstract, characters 1971–2111

e3
“the expression of these differentially expressed GLPs was analyzed in B. juncea plants, infected with Alternaria leaf spot disease causing agent (A) alternata”
✓ located verbatim in the source · abstract, characters 1811–1969

Title

Genome-wide identification and characterization of germin-like protein family in Brassica juncea reveals their role against biotic stress

Gulshan Abdul Sattar; Iqrar Ahmad Rana; Rana Muhammad Atif; et al. BMC Plant Biology 2025. doi:10.1186/s12870-025-07805-y

Other claims from this paper (15)

Observation Brassica juncea has 102 GLPs.
Observation Brassica nigra has 51 GLPs.
Observation Brassica rapa has 48 GLPs.
Observation Phylogenetic analysis of GLPs in B. juncea and its parents with Arabidopsis revealed 4 major clades.
Observation GLPs of the three Brassica species reside on all of their chromosomes.
Observation GLP motif, domain and gene structures are conserved among the three Brassica species.
Observation Synteny analysis shows that B. juncea GLP genes are similar and conserved as in its parental species.
Observation Candidate B. juncea GLP genes possess resistance properties against Alternaria alternata-induced leaf spot.
Observation Gene duplication events were observed in B. juncea and B. nigra.
Observation Twenty-five GLPs of B. juncea are responsive to biotic stresses at 2 DPI.
Observation Thirty GLPs of B. juncea are responsive to biotic stresses at 4 DPI.
Intervention effect Two GLPs (BjuGLP70 and BjuGLP97) are upregulated in B. juncea infected with Alternaria alternata.
Intervention effect Three GLPs (BjuGLP04, BjuGLP33, BjuGLP71) are downregulated in B. juncea infected with Alternaria alternata.
Intervention effect Two GLPs (BjuGLP72 and BjuGLP91) are downregulated in B. juncea infected with Alternaria alternata.
Observation The in-silico GLP expression trends of B. juncea were confirmed in vitro.

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Two GLPs (BjuGLP70 and BjuGLP97) are upregulated in B. juncea infected with Alternaria alternata.

Taxon: B. junceaBrassica junceae1
Treatment: infectede3
Interactor: (A) alternatae3pathogen
Gene: BjuGLP70, and BjuGLP97e2
Outcome: expressione2
Direction: upregulatede2

Not reportedComparator

Verbatim

e1
“We have identified 102 GLPs in B. juncea, 51 in B. nigra and 48 in B. rapa using in-silico tools”
✓ located verbatim in the source · abstract, characters 635–731

e2
“RT-qPCR analysis in (B) juncea revealed that the expression of 5 GLPs (BjuGLP06, BjuGLP23, BjuGLP34, BjuGLP70, and BjuGLP97) was upregulated”
✓ located verbatim in the source · abstract, characters 1971–2111

e3
“the expression of these differentially expressed GLPs was analyzed in B. juncea plants, infected with Alternaria leaf spot disease causing agent (A) alternata”
✓ located verbatim in the source · abstract, characters 1811–1969

Title

Genome-wide identification and characterization of germin-like protein family in Brassica juncea reveals their role against biotic stress

Gulshan Abdul Sattar; Iqrar Ahmad Rana; Rana Muhammad Atif; et al. BMC Plant Biology 2025. doi:10.1186/s12870-025-07805-y

Other claims from this paper (15)

Observation Brassica juncea has 102 GLPs.
Observation Brassica nigra has 51 GLPs.
Observation Brassica rapa has 48 GLPs.
Observation Phylogenetic analysis of GLPs in B. juncea and its parents with Arabidopsis revealed 4 major clades.
Observation GLPs of the three Brassica species reside on all of their chromosomes.
Observation GLP motif, domain and gene structures are conserved among the three Brassica species.
Observation Synteny analysis shows that B. juncea GLP genes are similar and conserved as in its parental species.
Observation Candidate B. juncea GLP genes possess resistance properties against Alternaria alternata-induced leaf spot.
Observation Gene duplication events were observed in B. juncea and B. nigra.
Observation Twenty-five GLPs of B. juncea are responsive to biotic stresses at 2 DPI.
Observation Thirty GLPs of B. juncea are responsive to biotic stresses at 4 DPI.
Intervention effect Three GLPs (BjuGLP06, BjuGLP23, BjuGLP34) are upregulated in B. juncea infected with Alternaria alternata.
Intervention effect Three GLPs (BjuGLP04, BjuGLP33, BjuGLP71) are downregulated in B. juncea infected with Alternaria alternata.
Intervention effect Two GLPs (BjuGLP72 and BjuGLP91) are downregulated in B. juncea infected with Alternaria alternata.
Observation The in-silico GLP expression trends of B. juncea were confirmed in vitro.

Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Three GLPs (BjuGLP04, BjuGLP33, BjuGLP71) are downregulated in B. juncea infected with Alternaria alternata.

Taxon: B. junceaBrassica junceae1
Treatment: infectede3
Interactor: (A) alternatae3pathogen
Gene: BjuGLP04, BjuGLP33, BjuGLP71e2
Outcome: expressione2
Direction: downregulatede2

Not reportedComparator

Verbatim

e1
“We have identified 102 GLPs in B. juncea, 51 in B. nigra and 48 in B. rapa using in-silico tools”
✓ located verbatim in the source · abstract, characters 635–731

e2
“the expression of 5 other GLPs (BjuGLP04, BjuGLP33, BjuGLP71, BjuGLP72, and BjuGLP91) was downregulated”
✓ located verbatim in the source · abstract, characters 2116–2219

e3
“the expression of these differentially expressed GLPs was analyzed in B. juncea plants, infected with Alternaria leaf spot disease causing agent (A) alternata”
✓ located verbatim in the source · abstract, characters 1811–1969

Title

Genome-wide identification and characterization of germin-like protein family in Brassica juncea reveals their role against biotic stress

Gulshan Abdul Sattar; Iqrar Ahmad Rana; Rana Muhammad Atif; et al. BMC Plant Biology 2025. doi:10.1186/s12870-025-07805-y

Other claims from this paper (15)

Observation Brassica juncea has 102 GLPs.
Observation Brassica nigra has 51 GLPs.
Observation Brassica rapa has 48 GLPs.
Observation Phylogenetic analysis of GLPs in B. juncea and its parents with Arabidopsis revealed 4 major clades.
Observation GLPs of the three Brassica species reside on all of their chromosomes.
Observation GLP motif, domain and gene structures are conserved among the three Brassica species.
Observation Synteny analysis shows that B. juncea GLP genes are similar and conserved as in its parental species.
Observation Candidate B. juncea GLP genes possess resistance properties against Alternaria alternata-induced leaf spot.
Observation Gene duplication events were observed in B. juncea and B. nigra.
Observation Twenty-five GLPs of B. juncea are responsive to biotic stresses at 2 DPI.
Observation Thirty GLPs of B. juncea are responsive to biotic stresses at 4 DPI.
Intervention effect Three GLPs (BjuGLP06, BjuGLP23, BjuGLP34) are upregulated in B. juncea infected with Alternaria alternata.
Intervention effect Two GLPs (BjuGLP70 and BjuGLP97) are upregulated in B. juncea infected with Alternaria alternata.
Intervention effect Two GLPs (BjuGLP72 and BjuGLP91) are downregulated in B. juncea infected with Alternaria alternata.
Observation The in-silico GLP expression trends of B. juncea were confirmed in vitro.

Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Two GLPs (BjuGLP72 and BjuGLP91) are downregulated in B. juncea infected with Alternaria alternata.

Taxon: B. junceaBrassica junceae1
Treatment: infectede3
Interactor: (A) alternatae3pathogen
Gene: BjuGLP72, and BjuGLP91e2
Outcome: expressione2
Direction: downregulatede2

Not reportedComparator

Verbatim

e1
“We have identified 102 GLPs in B. juncea, 51 in B. nigra and 48 in B. rapa using in-silico tools”
✓ located verbatim in the source · abstract, characters 635–731

e2
“the expression of 5 other GLPs (BjuGLP04, BjuGLP33, BjuGLP71, BjuGLP72, and BjuGLP91) was downregulated”
✓ located verbatim in the source · abstract, characters 2116–2219

e3
“the expression of these differentially expressed GLPs was analyzed in B. juncea plants, infected with Alternaria leaf spot disease causing agent (A) alternata”
✓ located verbatim in the source · abstract, characters 1811–1969

Title

Genome-wide identification and characterization of germin-like protein family in Brassica juncea reveals their role against biotic stress

Gulshan Abdul Sattar; Iqrar Ahmad Rana; Rana Muhammad Atif; et al. BMC Plant Biology 2025. doi:10.1186/s12870-025-07805-y

Other claims from this paper (15)

Observation Brassica juncea has 102 GLPs.
Observation Brassica nigra has 51 GLPs.
Observation Brassica rapa has 48 GLPs.
Observation Phylogenetic analysis of GLPs in B. juncea and its parents with Arabidopsis revealed 4 major clades.
Observation GLPs of the three Brassica species reside on all of their chromosomes.
Observation GLP motif, domain and gene structures are conserved among the three Brassica species.
Observation Synteny analysis shows that B. juncea GLP genes are similar and conserved as in its parental species.
Observation Candidate B. juncea GLP genes possess resistance properties against Alternaria alternata-induced leaf spot.
Observation Gene duplication events were observed in B. juncea and B. nigra.
Observation Twenty-five GLPs of B. juncea are responsive to biotic stresses at 2 DPI.
Observation Thirty GLPs of B. juncea are responsive to biotic stresses at 4 DPI.
Intervention effect Three GLPs (BjuGLP06, BjuGLP23, BjuGLP34) are upregulated in B. juncea infected with Alternaria alternata.
Intervention effect Two GLPs (BjuGLP70 and BjuGLP97) are upregulated in B. juncea infected with Alternaria alternata.
Intervention effect Three GLPs (BjuGLP04, BjuGLP33, BjuGLP71) are downregulated in B. juncea infected with Alternaria alternata.
Observation The in-silico GLP expression trends of B. juncea were confirmed in vitro.