RVB 5 claims

Interactor role: pathogen

Literal values, not normalised. 183,098 distinct spellings cover 1,706,259 claims; only letter case and spacing are merged, so “maize”, “corn” and “Zea mays L.” are three separate entries here. The By interacting organism view merges spellings of one organism through NCBI Taxonomy.

5 claims

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Observationobservedoriginal resultmeasured

Claim · model-written summary

RT-PCR confirmed rose virus B presence.

Interactor: RVBe0pathogen
Outcome: presence of RVBe0

Not reportedTaxon

Verbatim

e0
“the presence of RVB was confirmed by RT-PCR”
✓ located verbatim in the source · abstract, characters 1682–1725

Title

First Report of a New Carlavirus Provisionally Named Rose Virus B and Apple Mosaic Virus in Mixed Infections of Rosa sp. in Mexico

Candelario Ortega-Acosta; Daniel L. Ochoa-Martínez; Alfredo Diaz-Lara Plant Disease 2024. doi:10.1094/pdis-05-23-0934-pdn

Other claims from this paper (14)

Observation Symptomatic roses showed mosaic, vein yellowing, chlorotic line patterns and interveinal chlorosis.
Observation A rose virus B contig showed 90.6% identity to the reference.
Observation Three apple mosaic virus contigs were identified.
Observation The ApMV RNA1 contig had 98.4% identity to reference RNA1.
Observation The ApMV RNA2 contig had 89.7% identity to reference RNA2.
Observation The ApMV RNA3 contig had 98.6% identity to reference RNA3.
Observation No other viral sequence was identified in the assembled contigs.
Observation Sanger sequencing confirmed the identity of both viruses.
Observation The RVB replicase sequence had 93.9% nucleotide identity with a US isolate.
Observation The RVB CP sequence had 97.0% nucleotide identity with a US isolate.
Observation ApMV RNA1 had 99.2% nucleotide identity.
Observation ApMV RNA2 had 89.2% nucleotide identity.
Observation ApMV RNA3 had 99% nucleotide identity.
Observation Both viruses were detected in all four symptomatic rose plants.

Observationobservedoriginal resultmeasured

Claim · model-written summary

Sanger sequencing confirmed the identity of both viruses.

Interactor: RVBe0pathogen
Second interactor: ApMVIlarvirus ApMVe0pathogen
Outcome: identity of RVB and ApMVe0

Not reportedTaxon

Verbatim

e0
“The amplicons obtained for both viruses were subjected to Sanger sequencing, confirming the identity of RVB and ApMV.”
✓ located verbatim in the source · abstract, characters 2276–2393

Title

First Report of a New Carlavirus Provisionally Named Rose Virus B and Apple Mosaic Virus in Mixed Infections of Rosa sp. in Mexico

Candelario Ortega-Acosta; Daniel L. Ochoa-Martínez; Alfredo Diaz-Lara Plant Disease 2024. doi:10.1094/pdis-05-23-0934-pdn

Other claims from this paper (14)

Observation Symptomatic roses showed mosaic, vein yellowing, chlorotic line patterns and interveinal chlorosis.
Observation A rose virus B contig showed 90.6% identity to the reference.
Observation Three apple mosaic virus contigs were identified.
Observation The ApMV RNA1 contig had 98.4% identity to reference RNA1.
Observation The ApMV RNA2 contig had 89.7% identity to reference RNA2.
Observation The ApMV RNA3 contig had 98.6% identity to reference RNA3.
Observation No other viral sequence was identified in the assembled contigs.
Observation RT-PCR confirmed rose virus B presence.
Observation The RVB replicase sequence had 93.9% nucleotide identity with a US isolate.
Observation The RVB CP sequence had 97.0% nucleotide identity with a US isolate.
Observation ApMV RNA1 had 99.2% nucleotide identity.
Observation ApMV RNA2 had 89.2% nucleotide identity.
Observation ApMV RNA3 had 99% nucleotide identity.
Observation Both viruses were detected in all four symptomatic rose plants.

Observationobservedoriginal resultmeasured

Claim · model-written summary

The RVB replicase sequence had 93.9% nucleotide identity with a US isolate.

Interactor: RVBe0pathogen
Gene: RVB replicasee0
Outcome: nt identitye0
Value: 93.9%e0

Not reportedTaxon

Verbatim

e0
“The sequences from the RVB replicase (ON165241) and CP (ON165240) showed 93.9% and 97.0% nt identity with an RVB isolate reported in the USA (MT473961).”
✓ located verbatim in the source · abstract, characters 2394–2546

Title

First Report of a New Carlavirus Provisionally Named Rose Virus B and Apple Mosaic Virus in Mixed Infections of Rosa sp. in Mexico

Candelario Ortega-Acosta; Daniel L. Ochoa-Martínez; Alfredo Diaz-Lara Plant Disease 2024. doi:10.1094/pdis-05-23-0934-pdn

Other claims from this paper (14)

Observation Symptomatic roses showed mosaic, vein yellowing, chlorotic line patterns and interveinal chlorosis.
Observation A rose virus B contig showed 90.6% identity to the reference.
Observation Three apple mosaic virus contigs were identified.
Observation The ApMV RNA1 contig had 98.4% identity to reference RNA1.
Observation The ApMV RNA2 contig had 89.7% identity to reference RNA2.
Observation The ApMV RNA3 contig had 98.6% identity to reference RNA3.
Observation No other viral sequence was identified in the assembled contigs.
Observation RT-PCR confirmed rose virus B presence.
Observation Sanger sequencing confirmed the identity of both viruses.
Observation The RVB CP sequence had 97.0% nucleotide identity with a US isolate.
Observation ApMV RNA1 had 99.2% nucleotide identity.
Observation ApMV RNA2 had 89.2% nucleotide identity.
Observation ApMV RNA3 had 99% nucleotide identity.
Observation Both viruses were detected in all four symptomatic rose plants.

Observationobservedoriginal resultmeasured

Claim · model-written summary

The RVB CP sequence had 97.0% nucleotide identity with a US isolate.

Interactor: RVBe0pathogen
Gene: CPe0
Outcome: nt identitye0
Value: 97.0%e0

Not reportedTaxon

Verbatim

e0
“The sequences from the RVB replicase (ON165241) and CP (ON165240) showed 93.9% and 97.0% nt identity with an RVB isolate reported in the USA (MT473961).”
✓ located verbatim in the source · abstract, characters 2394–2546

Title

First Report of a New Carlavirus Provisionally Named Rose Virus B and Apple Mosaic Virus in Mixed Infections of Rosa sp. in Mexico

Candelario Ortega-Acosta; Daniel L. Ochoa-Martínez; Alfredo Diaz-Lara Plant Disease 2024. doi:10.1094/pdis-05-23-0934-pdn

Other claims from this paper (14)

Observation Symptomatic roses showed mosaic, vein yellowing, chlorotic line patterns and interveinal chlorosis.
Observation A rose virus B contig showed 90.6% identity to the reference.
Observation Three apple mosaic virus contigs were identified.
Observation The ApMV RNA1 contig had 98.4% identity to reference RNA1.
Observation The ApMV RNA2 contig had 89.7% identity to reference RNA2.
Observation The ApMV RNA3 contig had 98.6% identity to reference RNA3.
Observation No other viral sequence was identified in the assembled contigs.
Observation RT-PCR confirmed rose virus B presence.
Observation Sanger sequencing confirmed the identity of both viruses.
Observation The RVB replicase sequence had 93.9% nucleotide identity with a US isolate.
Observation ApMV RNA1 had 99.2% nucleotide identity.
Observation ApMV RNA2 had 89.2% nucleotide identity.
Observation ApMV RNA3 had 99% nucleotide identity.
Observation Both viruses were detected in all four symptomatic rose plants.

Observationobservedoriginal resultmeasured

Claim · model-written summary

Both viruses were detected in all four symptomatic rose plants.

Interactor: RVBe0pathogen
Second interactor: ApMVIlarvirus ApMVe0pathogen
Outcome: both viruses were detected in all the plants analyzede0

Not reportedTaxon

Verbatim

e0
“the four symptomatic plants were individually tested by RT-PCR to identify RVB and ApMV. Interestingly, both viruses were detected in all the plants analyzed.”
✓ located verbatim in the source · abstract, characters 2706–2864

Title

First Report of a New Carlavirus Provisionally Named Rose Virus B and Apple Mosaic Virus in Mixed Infections of Rosa sp. in Mexico

Candelario Ortega-Acosta; Daniel L. Ochoa-Martínez; Alfredo Diaz-Lara Plant Disease 2024. doi:10.1094/pdis-05-23-0934-pdn

Other claims from this paper (14)

Observation Symptomatic roses showed mosaic, vein yellowing, chlorotic line patterns and interveinal chlorosis.
Observation A rose virus B contig showed 90.6% identity to the reference.
Observation Three apple mosaic virus contigs were identified.
Observation The ApMV RNA1 contig had 98.4% identity to reference RNA1.
Observation The ApMV RNA2 contig had 89.7% identity to reference RNA2.
Observation The ApMV RNA3 contig had 98.6% identity to reference RNA3.
Observation No other viral sequence was identified in the assembled contigs.
Observation RT-PCR confirmed rose virus B presence.
Observation Sanger sequencing confirmed the identity of both viruses.
Observation The RVB replicase sequence had 93.9% nucleotide identity with a US isolate.
Observation The RVB CP sequence had 97.0% nucleotide identity with a US isolate.
Observation ApMV RNA1 had 99.2% nucleotide identity.
Observation ApMV RNA2 had 89.2% nucleotide identity.
Observation ApMV RNA3 had 99% nucleotide identity.