RYNV 33 claims

Interactor role: pathogen

Literal values, not normalised. 183,098 distinct spellings cover 1,706,259 claims; only letter case and spacing are merged, so “maize”, “corn” and “Zea mays L.” are three separate entries here. The By interacting organism view merges spellings of one organism through NCBI Taxonomy.

33 claims

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Observationobservedoriginal resultmeasured

Claim · model-written summary

RYNV was detected in 15% of samples.

Taxon: red raspberriesRubus idaeust0
Interactor: RYNVe0pathogen
Outcome: RYNVe0
Value: 15%e0

Verbatim

t0
“red raspberries”
✓ located verbatim in the source · title, characters 54–69

e0
“RYNV (15%)”
✓ located verbatim in the source · abstract, characters 1077–1087

Title

Prevalence and genetic diversity of viruses infecting red raspberries in Serbia

Jevremović, Darko; Vasilijević, Bojana ReFRI - Repository of the Fruit Research Institute 2025

Other claims from this paper (12)

Observation RLBV was the most prevalent detected virus in red raspberry samples at 49.7%.
Observation RLMV was detected in 17.6% of samples.
Observation BRNV was detected in 9.3% of samples.
Observation RpLV was detected in 6.7% of samples.
Observation RVCV was not detected in analyzed samples.
Observation Mixed virus infections occurred at a frequency of 87.5%, involving two to four viruses.
Observation Serbian RLBV isolates had 92.8−100% nucleotide sequence identity, similar to isolates elsewhere.
Observation Serbian RYNV isolates had 97.4‒100% nucleotide sequence identity.
Observation BRNV isolates shared 94.2–99.7% sequence identity.
Observation BRNV isolates were divergent from European and North American isolates at 80.0–82.2% nucleotide identity.
Observation RLMV isolates had 99.5–100% nucleotide identity.
Observation All Serbian RpLV isolates had identical sequences to one another and to a North American isolate.

Observationobservedoriginal resultmeasured

Claim · model-written summary

Serbian RYNV isolates had 97.4‒100% nucleotide sequence identity.

Taxon: red raspberriesRubus idaeust0
Interactor: RYNVe0pathogen
Outcome: nt sequence identitye0
Direction: highe0
Value: 97.4‒100%e0

Verbatim

t0
“red raspberries”
✓ located verbatim in the source · title, characters 54–69

e0
“Serbian RYNV isolates showed high (97.4‒100%) nt sequence identity”
✓ located verbatim in the source · abstract, characters 1604–1670

Title

Prevalence and genetic diversity of viruses infecting red raspberries in Serbia

Jevremović, Darko; Vasilijević, Bojana ReFRI - Repository of the Fruit Research Institute 2025

Other claims from this paper (12)

Observation RLBV was the most prevalent detected virus in red raspberry samples at 49.7%.
Observation RLMV was detected in 17.6% of samples.
Observation RYNV was detected in 15% of samples.
Observation BRNV was detected in 9.3% of samples.
Observation RpLV was detected in 6.7% of samples.
Observation RVCV was not detected in analyzed samples.
Observation Mixed virus infections occurred at a frequency of 87.5%, involving two to four viruses.
Observation Serbian RLBV isolates had 92.8−100% nucleotide sequence identity, similar to isolates elsewhere.
Observation BRNV isolates shared 94.2–99.7% sequence identity.
Observation BRNV isolates were divergent from European and North American isolates at 80.0–82.2% nucleotide identity.
Observation RLMV isolates had 99.5–100% nucleotide identity.
Observation All Serbian RpLV isolates had identical sequences to one another and to a North American isolate.

Method / resourceobservedoriginal resultpositivemeasured

Claim · model-written summary

RYNV recovery was 96% in Fairview.

Taxon: raspberryt0
Material: 'Fairview'e0
Interactor: RYNVe0pathogen
Outcome: RYNVe0
Value: 96%e0

Verbatim

e0
“RYNV at 96%, 94%, and 86% in 'Fairview', 'Stiora', and 'ZK', respectively”
✓ located verbatim in the source · abstract, characters 806–879

t0
“raspberry shoot tips”
✓ located verbatim in the source · title, characters 37–57

Title

Cryopreservation of Rubus viruses in raspberry shoot tips via droplet-vitrification: assessment of viral preservation, localization, and post-thaw transmission capacity

Xiao-Yan Ma; Dag‑Ragnar Blystad; Qiao-Chun Wang; et al. Plant Methods 2025. doi:10.1186/s13007-025-01454-w

Other claims from this paper (14)

Method / resource More than 90% of cryopreserved Zlatá Královna shoot tips survived.
Method / resource More than 90% of cryopreserved Tulameen shoot tips survived.
Method / resource More than 90% of shoot tips in Zlatá Královna regenerated into whole shoots.
Method / resource More than 90% of shoot tips in Tulameen regenerated into whole shoots.
Method / resource RBDV recovery was 86% in ZK.
Method / resource RBDV recovery was 87% in TUM.
Method / resource BRNV recovery was 66% in ZK.
Method / resource BRNV recovery was 45% in TUM.
Method / resource RYNV recovery was 94% in Stiora.
Method / resource RYNV recovery was 86% in ZK.
Observation RBDV and RYNV infected the apical dome and leaf primordia, while BRNV had a more limited distribution.
Observation Virus localization differed across raspberry cultivars.
Method / resource RBDV, BRNV and RYNV retained infectivity and were transmitted to healthy plants by micrografting.
Method / resource BRNV was transmitted by large raspberry aphids from cryopreserved material after thawing.

Method / resourceobservedoriginal resultpositivemeasured

Claim · model-written summary

RYNV recovery was 94% in Stiora.

Taxon: raspberryt0
Material: 'Stiora'e0
Interactor: RYNVe0pathogen
Outcome: RYNVe0
Value: 94%e0

Verbatim

e0
“RYNV at 96%, 94%, and 86% in 'Fairview', 'Stiora', and 'ZK', respectively”
✓ located verbatim in the source · abstract, characters 806–879

t0
“raspberry shoot tips”
✓ located verbatim in the source · title, characters 37–57

Title

Cryopreservation of Rubus viruses in raspberry shoot tips via droplet-vitrification: assessment of viral preservation, localization, and post-thaw transmission capacity

Xiao-Yan Ma; Dag‑Ragnar Blystad; Qiao-Chun Wang; et al. Plant Methods 2025. doi:10.1186/s13007-025-01454-w

Other claims from this paper (14)

Method / resource More than 90% of cryopreserved Zlatá Královna shoot tips survived.
Method / resource More than 90% of cryopreserved Tulameen shoot tips survived.
Method / resource More than 90% of shoot tips in Zlatá Královna regenerated into whole shoots.
Method / resource More than 90% of shoot tips in Tulameen regenerated into whole shoots.
Method / resource RBDV recovery was 86% in ZK.
Method / resource RBDV recovery was 87% in TUM.
Method / resource BRNV recovery was 66% in ZK.
Method / resource BRNV recovery was 45% in TUM.
Method / resource RYNV recovery was 96% in Fairview.
Method / resource RYNV recovery was 86% in ZK.
Observation RBDV and RYNV infected the apical dome and leaf primordia, while BRNV had a more limited distribution.
Observation Virus localization differed across raspberry cultivars.
Method / resource RBDV, BRNV and RYNV retained infectivity and were transmitted to healthy plants by micrografting.
Method / resource BRNV was transmitted by large raspberry aphids from cryopreserved material after thawing.

Method / resourceobservedoriginal resultpositivemeasured

Claim · model-written summary

RYNV recovery was 86% in ZK.

Taxon: raspberryt0
Material: 'ZK'e0
Interactor: RYNVe0pathogen
Outcome: RYNVe0
Value: 86%e0

Verbatim

e0
“RYNV at 96%, 94%, and 86% in 'Fairview', 'Stiora', and 'ZK', respectively”
✓ located verbatim in the source · abstract, characters 806–879

t0
“raspberry shoot tips”
✓ located verbatim in the source · title, characters 37–57

Title

Cryopreservation of Rubus viruses in raspberry shoot tips via droplet-vitrification: assessment of viral preservation, localization, and post-thaw transmission capacity

Xiao-Yan Ma; Dag‑Ragnar Blystad; Qiao-Chun Wang; et al. Plant Methods 2025. doi:10.1186/s13007-025-01454-w

Other claims from this paper (14)

Method / resource More than 90% of cryopreserved Zlatá Královna shoot tips survived.
Method / resource More than 90% of cryopreserved Tulameen shoot tips survived.
Method / resource More than 90% of shoot tips in Zlatá Královna regenerated into whole shoots.
Method / resource More than 90% of shoot tips in Tulameen regenerated into whole shoots.
Method / resource RBDV recovery was 86% in ZK.
Method / resource RBDV recovery was 87% in TUM.
Method / resource BRNV recovery was 66% in ZK.
Method / resource BRNV recovery was 45% in TUM.
Method / resource RYNV recovery was 96% in Fairview.
Method / resource RYNV recovery was 94% in Stiora.
Observation RBDV and RYNV infected the apical dome and leaf primordia, while BRNV had a more limited distribution.
Observation Virus localization differed across raspberry cultivars.
Method / resource RBDV, BRNV and RYNV retained infectivity and were transmitted to healthy plants by micrografting.
Method / resource BRNV was transmitted by large raspberry aphids from cryopreserved material after thawing.

Observationobservedoriginal resultmeasured

Claim · model-written summary

RBDV and RYNV infected the apical dome and leaf primordia, while BRNV had a more limited distribution.

Taxon: raspberryt0
Organ / stage: apical dome and LPse0
Interactor: RBDVRaspberry bushy dwarf viruse0pathogen
Second interactor: RYNVe0pathogen
Outcome: broad range of meristematic tissuese0
Qualifier: BRNV showed a more limited distributione0

Verbatim

e0
“RBDV and RYNV infected a broad range of meristematic tissues, including the apical dome and LPs, whereas BRNV showed a more limited distribution”
✓ located verbatim in the source · abstract, characters 962–1106

t0
“raspberry shoot tips”
✓ located verbatim in the source · title, characters 37–57

Title

Cryopreservation of Rubus viruses in raspberry shoot tips via droplet-vitrification: assessment of viral preservation, localization, and post-thaw transmission capacity

Xiao-Yan Ma; Dag‑Ragnar Blystad; Qiao-Chun Wang; et al. Plant Methods 2025. doi:10.1186/s13007-025-01454-w

Other claims from this paper (14)

Method / resource More than 90% of cryopreserved Zlatá Královna shoot tips survived.
Method / resource More than 90% of cryopreserved Tulameen shoot tips survived.
Method / resource More than 90% of shoot tips in Zlatá Královna regenerated into whole shoots.
Method / resource More than 90% of shoot tips in Tulameen regenerated into whole shoots.
Method / resource RBDV recovery was 86% in ZK.
Method / resource RBDV recovery was 87% in TUM.
Method / resource BRNV recovery was 66% in ZK.
Method / resource BRNV recovery was 45% in TUM.
Method / resource RYNV recovery was 96% in Fairview.
Method / resource RYNV recovery was 94% in Stiora.
Method / resource RYNV recovery was 86% in ZK.
Observation Virus localization differed across raspberry cultivars.
Method / resource RBDV, BRNV and RYNV retained infectivity and were transmitted to healthy plants by micrografting.
Method / resource BRNV was transmitted by large raspberry aphids from cryopreserved material after thawing.

Observationobservedoriginal resultmeasured

Claim · model-written summary

RT-PCR detected RYNV only in graft transmissible isolates.

Taxon: red raspberryRubus idaeuse1
Interactor: RYNVe0pathogen
Outcome: positive results for the viruse2

Not reportedDirection

Verbatim

e0
“Rubus yellow net virus (RYNV) infects Rubus spp.”
✓ located verbatim in the source · abstract, characters 0–48

e1
“the integration of RYNV into the red raspberry genome”
✓ located verbatim in the source · abstract, characters 1344–1397

e2
“Reverse transcription-PCR using RYNV-specific oligonucleotides after DNase treatment generated positive results for the virus in graft transmissible isolates (episomal) only”
✓ located verbatim in the source · abstract, characters 863–1036

Title

Evidence of Rubus Yellow Net Virus Integration into the Red Raspberry Genome

Alfredo Diaz-Lara; Nola J. Mosier; Kristian Stevens; et al. Cytogenetic and Genome Research 2020. doi:10.1159/000509845

Other claims from this paper (3)

Observationobservedoriginal resultmeasured

Claim · model-written summary

Rolling circle amplification identified RYNV amplicons only from plants with graft transmissible RYNV.

Taxon: red raspberryRubus idaeuse1
Interactor: RYNVe0pathogen
Outcome: amplicons identified as RYNVe3

Not reportedDirection

Verbatim

e0
“Rubus yellow net virus (RYNV) infects Rubus spp.”
✓ located verbatim in the source · abstract, characters 0–48

e1
“the integration of RYNV into the red raspberry genome”
✓ located verbatim in the source · abstract, characters 1344–1397

e3
“rolling circle amplification on DNA preparations from the same samples resulted in amplicons identified as RYNV only from plants with graft transmissible RYNV”
✓ located verbatim in the source · abstract, characters 1064–1222

Title

Evidence of Rubus Yellow Net Virus Integration into the Red Raspberry Genome

Alfredo Diaz-Lara; Nola J. Mosier; Kristian Stevens; et al. Cytogenetic and Genome Research 2020. doi:10.1159/000509845

Other claims from this paper (3)

Observation RT-PCR detected RYNV only in graft transmissible isolates.
Observation High-throughput sequencing identified RYNV-like sequences present in the host DNA.
Observation RYNV is integrated into the red raspberry genome.

Observationobservedoriginal resultmeasured

Claim · model-written summary

High-throughput sequencing identified RYNV-like sequences present in the host DNA.

Taxon: red raspberryRubus idaeuse1
Interactor: RYNVe0pathogen
Outcome: RYNV-like sequences present in the host DNAe4

Not reportedDirection

Verbatim

e0
“Rubus yellow net virus (RYNV) infects Rubus spp.”
✓ located verbatim in the source · abstract, characters 0–48

e1
“the integration of RYNV into the red raspberry genome”
✓ located verbatim in the source · abstract, characters 1344–1397

e4
“High-throughput sequencing was used to identify the RYNV-like sequences present in the host DNA”
✓ located verbatim in the source · abstract, characters 1224–1319

Title

Evidence of Rubus Yellow Net Virus Integration into the Red Raspberry Genome

Alfredo Diaz-Lara; Nola J. Mosier; Kristian Stevens; et al. Cytogenetic and Genome Research 2020. doi:10.1159/000509845

Other claims from this paper (3)

Observation RT-PCR detected RYNV only in graft transmissible isolates.
Observation Rolling circle amplification identified RYNV amplicons only from plants with graft transmissible RYNV.
Observation RYNV is integrated into the red raspberry genome.

Observationauthor interpretationoriginal resultmeasured

Claim · model-written summary

RYNV is integrated into the red raspberry genome.

Taxon: red raspberryRubus idaeuse1
Interactor: RYNVe0pathogen
Outcome: the integration of RYNV into the red raspberry genomee1

Not reportedDirection

Verbatim

e0
“Rubus yellow net virus (RYNV) infects Rubus spp.”
✓ located verbatim in the source · abstract, characters 0–48

e1
“the integration of RYNV into the red raspberry genome”
✓ located verbatim in the source · abstract, characters 1344–1397

Title

Evidence of Rubus Yellow Net Virus Integration into the Red Raspberry Genome

Alfredo Diaz-Lara; Nola J. Mosier; Kristian Stevens; et al. Cytogenetic and Genome Research 2020. doi:10.1159/000509845

Other claims from this paper (3)