Paper · 2015 · Federal Research Centre for Cultivated Plants (Julius Kühn-Institut)

Properties of a new isolate of grapevine leafroll-associated virus 2

Ghanem-Sabanadzovic, N. A.; Sabanadzovic, S.; Castellano, M. A.; et al.

6
claims
10
verbatim quotes
19
citations
2
research areas
✓
Open access

Abstract

A new isolate of grapevine leafroll-associated virus 2 (GLRaV-2-H4) was recovered by mechanically inoculating herbaceous hosts with concentrated tissue extracts from a North American accession of Vitis rupestris. Contrary to the Semillon isolate of GLRaV-2, isolate H4 elicited necrotic local lesions in Nicotiana clevelandii and infected systemically N. occidentalis inducing very severe symptoms. The migration rate of dissociated capsid protein of GLRaV-2-H4 in SDS-PAGE differed slightly from that of GLRaV-2-Sem. The coat protein sequence of GLRaV-2-H4 differed by about 12 % at the nucleotide level from capsid proteins of the other two GLRaV-2 isolates that have been sequenced to date. No serological differences could be detected. Isolate H4 is a biological variant of GLRaV-2, which can be distinguished from other mechanically transmitted isolates of the same virus because of differences in type and reactions of the herbaceous host range and in molecular traits of the coat protein cistron.

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Claims 6

Observationobservedoriginal resultnegativemeasured

Claim · model-written summary

H4 produced necrotic local lesions in Nicotiana clevelandii unlike the Semillon isolate.

Taxon
Nicotiana clevelandiiNicotiana clevelandiie0
Interactor
GLRaV-2e0pathogen
Outcome
necrotic local lesionse0
Comparator
Semillon isolatee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana clevelandii
Nicotiana clevelandii · TaxonAnthony Valois and the National Park Service · Public domain · Wikimedia Commons ↗

Verbatim

e0

“Contrary to the Semillon isolate of GLRaV-2, isolate H4 elicited necrotic local lesions in Nicotiana clevelandii”

✓ located verbatim in the source · abstract, characters 213–325 · show in text ↑
Observationobservedoriginal resultnegativemeasured

Claim · model-written summary

H4 systemically infected N. occidentalis with very severe symptoms.

Taxon
N. occidentalisNicotiana occidentalise0
Interactor
isolate H4e0pathogen
Outcome
infected systemically N. occidentalis inducing very severe symptomse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana occidentalis
Nicotiana occidentalis · TaxonJ.W. Wrigley · CC BY 4.0 · Wikimedia Commons ↗

Verbatim

e0

“isolate H4 elicited necrotic local lesions in Nicotiana clevelandii and infected systemically N. occidentalis inducing very severe symptoms.”

✓ located verbatim in the source · abstract, characters 258–398 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

H4 capsid protein migrated slightly differently from GLRaV-2-Sem protein.

Taxon
grapevineVitist0
Interactor
GLRaV-2-H4e0pathogen
Gene
capsid proteine0
Outcome
migration rate of dissociated capsid proteine0
Direction
differed slightlye0
Comparator
GLRaV-2-Seme0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Vitis
Vitis · Taxon · picture of the genus (one of its species)Victor M. Vicente Selvas · Public domain · Wikimedia Commons ↗

Verbatim

e0

“The migration rate of dissociated capsid protein of GLRaV-2-H4 in SDS-PAGE differed slightly from that of GLRaV-2-Sem.”

✓ located verbatim in the source · abstract, characters 399–517 · show in text ↑
t0

“grapevine”

✓ located verbatim in the source · title, characters 31–40 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

H4 coat protein sequence differed by about 12 % from two sequenced isolates.

Taxon
grapevineVitist0
Interactor
GLRaV-2-H4e0pathogen
Gene
coat proteine0
Outcome
coat protein sequencee0
Direction
differede0
Value
about 12 %e0
Comparator
the other two GLRaV-2 isolatese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Vitis
Vitis · Taxon · picture of the genus (one of its species)Victor M. Vicente Selvas · Public domain · Wikimedia Commons ↗

Verbatim

e0

“The coat protein sequence of GLRaV-2-H4 differed by about 12 % at the nucleotide level from capsid proteins of the other two GLRaV-2 isolates that have been sequenced to date.”

✓ located verbatim in the source · abstract, characters 518–693 · show in text ↑
t0

“grapevine”

✓ located verbatim in the source · title, characters 31–40 · show in text ↑
Observationobservedoriginal resultno effectmeasured

Claim · model-written summary

No serological differences were detected.

Taxon
grapevineVitist0
Outcome
serological differencese0
Direction
No serological differencese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Vitis
Vitis · Taxon · picture of the genus (one of its species)Victor M. Vicente Selvas · Public domain · Wikimedia Commons ↗

Verbatim

e0

“No serological differences could be detected.”

✓ located verbatim in the source · abstract, characters 694–739 · show in text ↑
t0

“grapevine”

✓ located verbatim in the source · title, characters 31–40 · show in text ↑
Observationauthor interpretationoriginal resultmeasured

Claim · model-written summary

H4 was classified as a biological variant distinguishable through host reactions and coat protein traits.

Taxon
grapevineVitist0
Interactor
GLRaV-2e0pathogen
Outcome
biological variant of GLRaV-2e0
Qualifier
differences in type and reactions of the herbaceous host range and in molecular traits of the coat protein cistrone0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Vitis
Vitis · Taxon · picture of the genus (one of its species)Victor M. Vicente Selvas · Public domain · Wikimedia Commons ↗

Verbatim

e0

“Isolate H4 is a biological variant of GLRaV-2, which can be distinguished from other mechanically transmitted isolates of the same virus because of differences in type and reactions of the herbaceous host range and in molecular traits of the coat protein cistron.”

✓ located verbatim in the source · abstract, characters 740–1003 · show in text ↑
t0

“grapevine”

✓ located verbatim in the source · title, characters 31–40 · show in text ↑