Paper · 2005 · Molecular Ecology

Determining self‐incompatibility genotypes in Belgian wild cherries

B. DE CUYPER; T. SONNEVELD; K. R. TOBUTT

8
claims
15
verbatim quotes
73
citations
4
research areas
—
Not open access

Abstract

ABSTRACT The self-incompatibility (S) genotypes of a collection of 65 Belgian accessions of wild cherry, selected within two populations and planted in a seed orchard, were determined using polymerase chain reaction (PCR) methods. Initially, DNA extracts were amplified with consensus primers that amplify across the second intron of the S-ribonuclease gene which shows considerable length polymorphism. The provisional genotypes deduced were checked with the appropriate allele-specific primers for the known alleles S(1) to S(16). Putative new alleles were subjected to PCR with consensus primers amplifying across the first intron. Six new alleles, S(17) to S(22), were thus indicated on the basis of the estimated lengths of the first and second intron PCR products. Examples of these alleles were partially sequenced and were indeed mutually distinct and different from the known alleles. The incompatibility genotypes of all 65 accessions were determined and one triploid individual was found. Seventeen alleles were detected in all. Allele frequencies differed between samples and the expected total number of alleles in the underlying populations was estimated. The wild cherry populations differed significantly with respect to allelic frequencies from sweet cherry cultivars; alleles S(4) and S(5), which are moderately frequent in sweet cherry, were absent from the wild cherry accessions. The knowledge of the S genotypes will be useful for studying the gene flow within the seed orchard and these approaches should also be informative in wild populations.

Abstract from the paper’s OpenAlex record, shown for indexing and research. Copyright remains with the authors or the publisher. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 8

Observationobservedoriginal resultmeasured

Claim · model-written summary

Six previously unreported S alleles were indicated.

Taxon
wild cherriest0
Gene
S(17) to S(22)e0
Outcome
new alleles, S(17) to S(22)e0
Value
Sixe0

Verbatim

e0

“Six new alleles, S(17) to S(22), were thus indicated on the basis of the estimated lengths of the first and second intron PCR products.”

✓ located verbatim in the source · abstract, characters 635–770 · show in text ↑
t0

“wild cherries”

✓ located verbatim in the source · title, characters 54–67 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The putative new alleles were mutually distinct and different from known alleles.

Taxon
wild cherriest0
Outcome
mutually distinct and different from the known allelese0

Verbatim

e0

“Examples of these alleles were partially sequenced and were indeed mutually distinct and different from the known alleles.”

✓ located verbatim in the source · abstract, characters 771–893 · show in text ↑
t0

“wild cherries”

✓ located verbatim in the source · title, characters 54–67 · show in text ↑
Method / resourceobservedoriginal resultpositivemeasured

Claim · model-written summary

Incompatibility genotypes were determined for all 65 accessions.

Taxon
wild cherriest0
Outcome
incompatibility genotypese0
Value
65 accessionse0

Verbatim

e0

“The incompatibility genotypes of all 65 accessions were determined and one triploid individual was found.”

✓ located verbatim in the source · abstract, characters 894–999 · show in text ↑
t0

“wild cherries”

✓ located verbatim in the source · title, characters 54–67 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

One triploid wild cherry individual was found.

Taxon
wild cherriest0
Outcome
triploid individuale0
Value
onee0

Verbatim

e0

“The incompatibility genotypes of all 65 accessions were determined and one triploid individual was found.”

✓ located verbatim in the source · abstract, characters 894–999 · show in text ↑
t0

“wild cherries”

✓ located verbatim in the source · title, characters 54–67 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Seventeen alleles were detected.

Taxon
wild cherriest0
Outcome
allelese0
Value
Seventeene0

Verbatim

e0

“Seventeen alleles were detected in all.”

✓ located verbatim in the source · abstract, characters 1000–1039 · show in text ↑
t0

“wild cherries”

✓ located verbatim in the source · title, characters 54–67 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Allele frequencies differed between samples.

Taxon
wild cherriest0
Outcome
Allele frequenciese0
Direction
differede0

Verbatim

e0

“Allele frequencies differed between samples”

✓ located verbatim in the source · abstract, characters 1040–1083 · show in text ↑
t0

“wild cherries”

✓ located verbatim in the source · title, characters 54–67 · show in text ↑
Associationobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Wild cherry populations differed significantly in allelic frequencies from sweet cherry cultivars.

Taxon
wild cherrye0
Outcome
allelic frequenciese0
Direction
differede0
Comparator
sweet cherry cultivarse0

Verbatim

e0

“The wild cherry populations differed significantly with respect to allelic frequencies from sweet cherry cultivars”

✓ located verbatim in the source · abstract, characters 1170–1284 · show in text ↑
t0

“wild cherries”

✓ located verbatim in the source · title, characters 54–67 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

S(4) and S(5) were absent from wild cherry accessions.

Taxon
wild cherrye0
Gene
S(4) and S(5)e0
Outcome
absent from the wild cherry accessionse0

Verbatim

e0

“alleles S(4) and S(5), which are moderately frequent in sweet cherry, were absent from the wild cherry accessions.”

✓ located verbatim in the source · abstract, characters 1286–1400 · show in text ↑