Paper · 1984 · Nucleic Acids Research

DNA sequence analysis of crown gall tumor T-DNA encoding the 0.7kb transcript

Joan C. McPherson

4
claims
9
verbatim quotes
1
citations
1
research areas
✓
Open access

Abstract

Crown gall tumor formation involves integration into the plant genome of DNA sequences (the T-region) of tumor-inducing (Ti) plasmids present in Agrobacterium tumefaciens. The T-DNA of the tumor expresses several gene products. Little is known about the function or regulation of expression of the 0.7kb transcript, which represents a relatively abundant T-DNA transcript in octopine-type tumors. In this report, a detailed structural analysis of the gene encoding the 0.7 kb transcript has been obtained by DNA sequence analysis of T-DNA isolated from A6S/2 tumor line. An indication of the structural characteristics of the protein product is obtained from the predicted amino acid sequence. The sequences flanking the open reading frame show characteristics with other eucaryotic genes. The corresponding DNA sequence of the inducing Ti plasmid (pTiA6) is identical with that of the DNA sequence from the tumor. Comparison of this gene sequence with the corresponding region of another Ti plasmid (pTiAch5) shows several differences in the 5' flanking sequence, but the nucleotide sequence of the coding region and 3' flanking region are identical.

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Claims 4

Observationobservedoriginal resultmeasured

Claim · model-written summary

Structural analysis of the gene encoding the 0.7 kb transcript was obtained from T-DNA of the A6S/2 tumour line.

Taxon
Agrobacterium tumefaciensAgrobacterium tumefaciense0
Material
A6S/2 tumor linee1
Gene
0.7 kb transcripte1
Outcome
structural analysis of the gene encoding the 0.7 kb transcripte1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Agrobacterium tumefaciens
Agrobacterium tumefaciens · TaxonClemson University - USDA Cooperative Extension Slide Series, Bugwood.org · Public domain · Wikimedia Commons ↗

Verbatim

e0

“tumor-inducing (Ti) plasmids present in Agrobacterium tumefaciens”

✓ located verbatim in the source · abstract, characters 105–170 · show in text ↑
e1

“a detailed structural analysis of the gene encoding the 0.7 kb transcript has been obtained by DNA sequence analysis of T-DNA isolated from A6S/2 tumor line”

✓ located verbatim in the source · abstract, characters 413–569 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The DNA sequence of the inducing Ti plasmid pTiA6 is identical to the T-DNA sequence from the tumour.

Taxon
Agrobacterium tumefaciensAgrobacterium tumefaciense0
Outcome
DNA sequence of the inducing Ti plasmid (pTiA6)e2
Qualifier
identical with that of the DNA sequence from the tumore2

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Agrobacterium tumefaciens
Agrobacterium tumefaciens · TaxonClemson University - USDA Cooperative Extension Slide Series, Bugwood.org · Public domain · Wikimedia Commons ↗

Verbatim

e0

“tumor-inducing (Ti) plasmids present in Agrobacterium tumefaciens”

✓ located verbatim in the source · abstract, characters 105–170 · show in text ↑
e2

“The corresponding DNA sequence of the inducing Ti plasmid (pTiA6) is identical with that of the DNA sequence from the tumor”

✓ located verbatim in the source · abstract, characters 790–913 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The gene sequence differs from that of Ti plasmid pTiAch5 in several places in the 5' flanking sequence.

Taxon
Agrobacterium tumefaciensAgrobacterium tumefaciense0
Outcome
5' flanking sequencee3
Qualifier
several differencese3
Comparator
pTiAch5e3

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Agrobacterium tumefaciens
Agrobacterium tumefaciens · TaxonClemson University - USDA Cooperative Extension Slide Series, Bugwood.org · Public domain · Wikimedia Commons ↗

Verbatim

e0

“tumor-inducing (Ti) plasmids present in Agrobacterium tumefaciens”

✓ located verbatim in the source · abstract, characters 105–170 · show in text ↑
e3

“Comparison of this gene sequence with the corresponding region of another Ti plasmid (pTiAch5) shows several differences in the 5' flanking sequence”

✓ located verbatim in the source · abstract, characters 915–1063 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The coding region and 3' flanking region of the gene are identical to those of Ti plasmid pTiAch5.

Taxon
Agrobacterium tumefaciensAgrobacterium tumefaciense0
Outcome
nucleotide sequence of the coding region and 3' flanking regione4
Qualifier
identicale4
Comparator
pTiAch5e3

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Agrobacterium tumefaciens
Agrobacterium tumefaciens · TaxonClemson University - USDA Cooperative Extension Slide Series, Bugwood.org · Public domain · Wikimedia Commons ↗

Verbatim

e0

“tumor-inducing (Ti) plasmids present in Agrobacterium tumefaciens”

✓ located verbatim in the source · abstract, characters 105–170 · show in text ↑
e3

“Comparison of this gene sequence with the corresponding region of another Ti plasmid (pTiAch5) shows several differences in the 5' flanking sequence”

✓ located verbatim in the source · abstract, characters 915–1063 · show in text ↑
e4

“the nucleotide sequence of the coding region and 3' flanking region are identical”

✓ located verbatim in the source · abstract, characters 1069–1150 · show in text ↑