Paper · 2006 · Plant Disease

New Polish Isolate of Pepino mosaic virus Highly Distinct from European Tomato, Peruvian, and US2 Strains

H. Pospieszny; N. Borodynko

10
claims
10
verbatim quotes
30
citations
3
research areas
—
Not open access

Abstract

Pepino mosaic virus (PepMV, genus Potexvirus) was first described on pepino (Solanum muricatum) in Peru during 1980. Since 1999, the virus was reported in several European countries and in North and South America as an agent of viral disease of tomato crops. In Poland in 2002, the PepMV-SW isolate that was genetically similar to European isolates (approximately 99% identity) was identified (3). In November 2005, in the western part of the Wielkopolska Region, a virus with flexuous filamentous particles approximately 500 nm long was isolated from tomato fruits exhibiting symptoms of discoloration. Crude sap from Nicotiana benthamiana leaves was used for mechanical inoculation of indicator plants. The virus caused symptoms on N. benthamiana, N. clevelandii, Datura inoxia, and Lycopersicon esculentum. Symptomless infection on N. tabacum cv. Xanthi nc, N. tabacum cv. White Burley, and N. debneyi was confirmed by back-inoculation on N. benthamiana. The virus did not infect N. glutinosa, Physalis floridana, Petunia hybrida, Capsicum annuum, Chenopodium quinoa, Cucumis sativus, or Phaseolus vulgaris. The virus was initially identified using double-antibody sandwich enzyme-linked immunosorbent assay (DAS-ELISA) with polyclonal antiserum against PepMV (DSMZ, Braunschweig, Germany). Positive serological reactions were obtained with sap from inoculated N. benthamiana, L. esculentum, and N. clevelandii plants. The serological identification was confirmed using a reverse transcription-polymerase chain reaction (RT-PCR) with primers generated from a sequence of the RNA polymerase region of an isolate of PepMV reported in the United Kingdom (1). Sequence information obtained from the amplified fragment of the virus designated PepMV-PK (GenBank Accession No. DQ387870), showed only 81% nt identity and 89% amino acid identity with PepMV-SW (GenBank Accession No. DQ387869). PepMV isolates can be divided into three strains including European tomato, Peruvian, and US2 based on their genetic diversity (2). The PepMV-PK isolate resulted in nucleotide identities ranging from 79 to 81% with isolates of the European tomato strain (GenBank Accession Nos. AJ438767, AF340024, AF484251, AJ271991, AJ606359, and AJ290424), 81% with the Peruvian strain (GenBank Accession Nos. AM109896 and AJ606361), and 78% identity with each of the U.S. isolates US1 (GenBank Accession No. AY509926) and US2 (GenBank Accession No. AY509927). These results show that the new Polish isolate is distinct from all other PepMV isolates reported to date. References: (1) C. J. French et al. Plant Dis. 85:1121, 2001. (2) L. Pagan et al. Phytopathology 96:274, 2006. (3) H. Pospieszny et al. Phytopathol. Pol. 26:91, 2002.

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Claims 10

Observationobservedoriginal resultmeasured

Claim · model-written summary

A virus was isolated from discolored tomato fruits in western Wielkopolska.

Interactor
a viruse0pathogen
Outcome
tomato fruits exhibiting symptoms of discoloratione0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“a virus with flexuous filamentous particles approximately 500 nm long was isolated from tomato fruits exhibiting symptoms of discoloration”

✓ located verbatim in the source · abstract, characters 464–602 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The virus caused symptoms in four tested plant species.

Taxon
N. benthamiana, N. clevelandii, Datura inoxia, and Lycopersicon esculentumDatura inoxiaSolanum lycopersicumNicotiana benthamianaNicotiana clevelandiie0
Interactor
The viruse0pathogen
Outcome
symptomse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Datura inoxia
Datura inoxia · TaxonAgnieszka Kwiecień, Nova · CC BY-SA 4.0 · Wikimedia Commons ↗
Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗
Nicotiana benthamiana
Nicotiana benthamiana · TaxonCharles Andres · CC BY-SA 3.0 · Wikimedia Commons ↗
Nicotiana clevelandii
Nicotiana clevelandii · TaxonAnthony Valois and the National Park Service · Public domain · Wikimedia Commons ↗

Verbatim

e0

“The virus caused symptoms on N. benthamiana, N. clevelandii, Datura inoxia, and Lycopersicon esculentum.”

✓ located verbatim in the source · abstract, characters 705–809 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Three Nicotiana hosts had symptomless infection.

Taxon
N. tabacumNicotiana tabacume0
Material
cv. Xanthi nc, N. tabacum cv. White Burley, and N. debneyie0
Outcome
Symptomless infectione0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana tabacum
Nicotiana tabacum · TaxonJom / Joachim Müllerchen · CC BY 2.5 · Wikimedia Commons ↗

Verbatim

e0

“Symptomless infection on N. tabacum cv. Xanthi nc, N. tabacum cv. White Burley, and N. debneyi was confirmed”

✓ located verbatim in the source · abstract, characters 810–918 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The virus failed to infect eight tested plant species.

Taxon
N. glutinosa, Physalis floridana, Petunia hybridaPetunia ×hybridaNicotiana glutinosaPhysalis pubescense0
Interactor
The viruse0pathogen
Outcome
did not infecte0
Qualifier
Capsicum annuum, Chenopodium quinoa, Cucumis sativus, or Phaseolus vulgarise0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Petunia x hybrida
Petunia ×hybrida · TaxonW. Bulach · CC BY-SA 4.0 · Wikimedia Commons ↗
Nicotiana glutinosa
Nicotiana glutinosa · TaxonUleli · CC BY 3.0 · Wikimedia Commons ↗
Physalis pubescens
Physalis pubescens · TaxonRoger Culos · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“The virus did not infect N. glutinosa, Physalis floridana, Petunia hybrida, Capsicum annuum, Chenopodium quinoa, Cucumis sativus, or Phaseolus vulgaris.”

✓ located verbatim in the source · abstract, characters 958–1110 · show in text ↑
Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

Inoculated plants gave positive PepMV serological reactions.

Taxon
N. benthamiana, L. esculentum, and N. clevelandiiSolanum lycopersicumNicotiana benthamianaNicotiana clevelandiie0
Outcome
Positive serological reactionse0

Not reportedComparatorValue

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗
Nicotiana benthamiana
Nicotiana benthamiana · TaxonCharles Andres · CC BY-SA 3.0 · Wikimedia Commons ↗
Nicotiana clevelandii
Nicotiana clevelandii · TaxonAnthony Valois and the National Park Service · Public domain · Wikimedia Commons ↗

Verbatim

e0

“Positive serological reactions were obtained with sap from inoculated N. benthamiana, L. esculentum, and N. clevelandii plants.”

✓ located verbatim in the source · abstract, characters 1294–1421 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

PepMV-PK showed 81% nucleotide identity with PepMV-SW.

Outcome
nt identitye0
Value
81%e0
Comparator
PepMV-SWe0

Not reportedTaxon

Verbatim

e0

“showed only 81% nt identity and 89% amino acid identity with PepMV-SW”

✓ located verbatim in the source · abstract, characters 1784–1853 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

PepMV-PK showed 89% amino acid identity with PepMV-SW.

Outcome
amino acid identitye0
Value
89%e0
Comparator
PepMV-SWe0

Not reportedTaxon

Verbatim

e0

“showed only 81% nt identity and 89% amino acid identity with PepMV-SW”

✓ located verbatim in the source · abstract, characters 1784–1853 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

PepMV-PK had 79 to 81% nucleotide identity with European tomato strain isolates.

Outcome
nucleotide identitiese0
Value
79 to 81%e0
Comparator
European tomato straine0

Not reportedTaxon

Verbatim

e0

“nucleotide identities ranging from 79 to 81% with isolates of the European tomato strain”

✓ located verbatim in the source · abstract, characters 2053–2141 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

PepMV-PK had 81% nucleotide identity with the Peruvian strain.

Outcome
81% with the Peruvian straine0
Value
81%e0
Comparator
Peruvian straine0

Not reportedTaxon

Verbatim

e0

“81% with the Peruvian strain”

✓ located verbatim in the source · abstract, characters 2231–2259 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

PepMV-PK had 78% identity with US1 and US2 isolates.

Outcome
identitye0
Value
78%e0
Comparator
U.S. isolates US1e0

Not reportedTaxon

Verbatim

e0

“78% identity with each of the U.S. isolates US1 (GenBank Accession No. AY509926) and US2”

✓ located verbatim in the source · abstract, characters 2312–2400 · show in text ↑