Paper · 2014 · Genome

Phylogenetic relationships of species of genusArachisbased on genic sequences

Guohao He; Noelle A. Barkley; Yongli Zhao; et al.

8
claims
15
verbatim quotes
8
citations
2
research areas
—
Not open access

Abstract

The genus Arachis (Fabaceae), which originated in South America, consists of 80 species. Based on morphological traits and cross-compatibility among the species, the genus is divided into nine taxonomic sections. Arachis is the largest section including the economically valuable cultivated peanut (A. hypogaea). Seven genic sequences were utilized to better understand the phylogenetic relationships between species of genus Arachis. Our study displayed four clades of species of Arachis. Arachis triseminata was genetically isolated from all other species of Arachis studied, and it formed the basal clade with A. retusa and A. dardani from the most ancient sections Extranervosae and Heteranthae, respectively. Species of section Arachis formed a separated single clade from all other species, within which species having B and D genome clustered in one subgroup and three species characterized with an A genome grouped together in another subgroup. A divergent clade including species from five sections was sister to the clade of section Arachis. Between the sister clades and the basal clade there was a clade containing species from the more advanced sections. Phylogenetic relationships of all the species of Arachis using multiple genic sequences were similar to the phylogenies produced with single-copy genes.

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Claims 8

Observationobservedoriginal resultmeasured

Claim · model-written summary

The Arachis species formed four clades.

Taxon
ArachisArachise0e1
Outcome
cladese0e1
Value
foure0e1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arachis
Arachis · Taxon · picture from its Wikimedia Commons categoryBtcpg · CC BY 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Our study displayed four clades of species of Arachis.”

✓ located verbatim in the source · abstract, characters 435–489 · show in text ↑
e1

“The genus Arachis (Fabaceae)”

✓ located verbatim in the source · abstract, characters 0–28 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Arachis triseminata was isolated and basal with A. retusa and A. dardani.

Taxon
Arachis triseminataArachis triseminatae0
Outcome
basal cladee0
Comparator
all other species of Arachis studiede0

Verbatim

e0

“Arachis triseminata was genetically isolated from all other species of Arachis studied, and it formed the basal clade with A. retusa and A. dardani”

✓ located verbatim in the source · abstract, characters 490–637 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Section Arachis formed a separate clade.

Taxon
ArachisArachise0e1
Outcome
separated single cladee0e1
Comparator
all other speciese0e1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arachis
Arachis · Taxon · picture from its Wikimedia Commons categoryBtcpg · CC BY 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Species of section Arachis formed a separated single clade from all other species”

✓ located verbatim in the source · abstract, characters 714–795 · show in text ↑
e1

“The genus Arachis (Fabaceae)”

✓ located verbatim in the source · abstract, characters 0–28 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Species with B and D genomes clustered together.

Taxon
ArachisArachise0e1
Gene
B and D genomee0e1
Outcome
clustered in one subgroupe0e1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arachis
Arachis · Taxon · picture from its Wikimedia Commons categoryBtcpg · CC BY 4.0 · Wikimedia Commons ↗

Verbatim

e0

“species having B and D genome clustered in one subgroup”

✓ located verbatim in the source · abstract, characters 810–865 · show in text ↑
e1

“The genus Arachis (Fabaceae)”

✓ located verbatim in the source · abstract, characters 0–28 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Three A-genome species grouped in another subgroup.

Taxon
ArachisArachise0e1
Gene
A genomee0e1
Outcome
grouped together in another subgroupe0e1
Value
three speciese0e1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arachis
Arachis · Taxon · picture from its Wikimedia Commons categoryBtcpg · CC BY 4.0 · Wikimedia Commons ↗

Verbatim

e0

“three species characterized with an A genome grouped together in another subgroup”

✓ located verbatim in the source · abstract, characters 870–951 · show in text ↑
e1

“The genus Arachis (Fabaceae)”

✓ located verbatim in the source · abstract, characters 0–28 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

A divergent clade from five sections was sister to section Arachis.

Taxon
ArachisArachise0e1
Outcome
sister to the cladee0e1
Value
five sectionse0e1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arachis
Arachis · Taxon · picture from its Wikimedia Commons categoryBtcpg · CC BY 4.0 · Wikimedia Commons ↗

Verbatim

e0

“A divergent clade including species from five sections was sister to the clade of section Arachis.”

✓ located verbatim in the source · abstract, characters 953–1051 · show in text ↑
e1

“The genus Arachis (Fabaceae)”

✓ located verbatim in the source · abstract, characters 0–28 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

A clade of advanced sections lay between the sister and basal clades.

Taxon
ArachisArachise0e1
Outcome
clade containing species from the more advanced sectionse0e1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arachis
Arachis · Taxon · picture from its Wikimedia Commons categoryBtcpg · CC BY 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Between the sister clades and the basal clade there was a clade containing species from the more advanced sections.”

✓ located verbatim in the source · abstract, characters 1052–1167 · show in text ↑
e1

“The genus Arachis (Fabaceae)”

✓ located verbatim in the source · abstract, characters 0–28 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Multiple-genic-sequence phylogeny resembled single-copy-gene phylogenies.

Taxon
ArachisArachise0e1
Outcome
Phylogenetic relationshipse0e1
Direction
similare0e1
Comparator
phylogenies produced with single-copy genese0e1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arachis
Arachis · Taxon · picture from its Wikimedia Commons categoryBtcpg · CC BY 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Phylogenetic relationships of all the species of Arachis using multiple genic sequences were similar to the phylogenies produced with single-copy genes.”

✓ located verbatim in the source · abstract, characters 1168–1320 · show in text ↑
e1

“The genus Arachis (Fabaceae)”

✓ located verbatim in the source · abstract, characters 0–28 · show in text ↑