Paper · 2012 · Applied and Environmental Microbiology

The Salmonella Transcriptome in Lettuce and Cilantro Soft Rot Reveals a Niche Overlap with the Animal Host Intestine

Danielle M. Goudeau; Craig T. Parker; Yaguang Zhou; et al.

11
claims
13
verbatim quotes
99
citations
2
research areas
✓
Open access

Abstract

Fresh vegetables have been recurrently associated with salmonellosis outbreaks, and Salmonella contamination of retail produce has been correlated positively with the presence of soft rot disease. We observed that population sizes of Salmonella enterica serovar Typhimurium SL1344 increased 56-fold when inoculated alone onto cilantro leaves, versus 2,884-fold when coinoculated with Dickeya dadantii, a prevalent pathogen that macerates plant tissue. A similar trend in S. enterica populations was observed for soft-rotted lettuce leaves. Transcriptome analysis of S. enterica cells that colonized D. dadantii-infected lettuce and cilantro leaves revealed a clear shift toward anaerobic metabolism and catabolism of substrates that are available due to the degradation of plant cells by the pectinolytic pathogen. Twenty-nine percent of the genes that were upregulated in cilantro macerates were also previously observed to have increased expression levels in the chicken intestine. Furthermore, multiple genes induced in soft rot lesions are also involved in the colonization of mouse, pig, and bovine models of host infection. Among those genes, the operons for ethanolamine and propanediol utilization as well as for the synthesis of cobalamin, a cofactor in these pathways, were the most highly upregulated genes in lettuce and cilantro lesions. In S. Typhimurium strain LT2, population sizes of mutants deficient in propanediol utilization or cobalamin synthesis were 10- and 3-fold lower, respectively, than those of the wild-type strain in macerated cilantro (P < 0.0002); in strain SL1344, such mutants behaved similarly to the parental strain. Anaerobic conditions and the utilization of nutrients in macerated plant tissue that are also present in the animal intestine indicate a niche overlap that may explain the high level of adaptation of S. enterica to soft rot lesions, a common postharvest plant disease.

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Claims 11

Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

Salmonella enterica increased 56-fold on cilantro leaves when inoculated alone.

Treatment
inoculated alonee0
Interactor
Salmonella enterica serovar Typhimurium SL1344Salmonella entericae0other
Outcome
population sizes of Salmonella enterica serovar Typhimurium SL1344e0
Direction
increasede0
Value
56-folde0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Coriandrum sativum
Coriandrum sativum · TaxonThamizhpparithi Maari · CC BY-SA 3.0 · Wikimedia Commons ↗
Salmonella enterica
Salmonella enterica · InteractorCenters for Disease Control and Prevention · Public domain · Wikimedia Commons ↗

Verbatim

e0

“population sizes of Salmonella enterica serovar Typhimurium SL1344 increased 56-fold when inoculated alone onto cilantro leaves”

✓ located verbatim in the source · abstract, characters 214–341 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Coinoculation with Dickeya dadantii yielded a 2,884-fold increase in Salmonella population on cilantro leaves.

Treatment
coinoculated with Dickeya dadantiie0
Interactor
Salmonella enterica serovar Typhimurium SL1344Salmonella entericae0other
Second interactor
Dickeya dadantiiDickeya dadantiie0pathogen
Outcome
population sizes of Salmonella enterica serovar Typhimurium SL1344e0
Direction
increasede0
Value
2,884-folde0
Comparator
inoculated alonee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Coriandrum sativum
Coriandrum sativum · TaxonThamizhpparithi Maari · CC BY-SA 3.0 · Wikimedia Commons ↗
Salmonella enterica
Salmonella enterica · InteractorCenters for Disease Control and Prevention · Public domain · Wikimedia Commons ↗
Dickeya dadantii
Dickeya dadantii · Second interactorScot Nelson · CC0 · Wikimedia Commons ↗

Verbatim

e0

“population sizes of Salmonella enterica serovar Typhimurium SL1344 increased 56-fold when inoculated alone onto cilantro leaves, versus 2,884-fold when coinoculated with Dickeya dadantii, a prevalent pathogen that macerates plant tissue”

✓ located verbatim in the source · abstract, characters 214–450 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Salmonella populations showed a similar soft rot trend on lettuce leaves.

Taxon
lettuceLactuca sativae0
Interactor
S. entericaSalmonella entericae0other
Outcome
S. enterica populationse0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Lactuca sativa
Lactuca sativa · Taxonen:User:Geographer · CC BY 1.0 · Wikimedia Commons ↗
Salmonella enterica
Salmonella enterica · InteractorCenters for Disease Control and Prevention · Public domain · Wikimedia Commons ↗

Verbatim

e0

“A similar trend in S. enterica populations was observed for soft-rotted lettuce leaves”

✓ located verbatim in the source · abstract, characters 452–538 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Salmonella on infected lettuce and cilantro leaves shifted toward anaerobic metabolism.

Taxon
lettuce and cilantroCoriandrum sativumLactuca sativae0
Interactor
S. entericaSalmonella entericae0other
Second interactor
D. dadantiiDickeya dadantiie0pathogen
Outcome
anaerobic metabolisme0
Direction
shift towarde0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Coriandrum sativum
Coriandrum sativum · TaxonThamizhpparithi Maari · CC BY-SA 3.0 · Wikimedia Commons ↗
Lactuca sativa
Lactuca sativa · Taxonen:User:Geographer · CC BY 1.0 · Wikimedia Commons ↗
Salmonella enterica
Salmonella enterica · InteractorCenters for Disease Control and Prevention · Public domain · Wikimedia Commons ↗
Dickeya dadantii
Dickeya dadantii · Second interactorScot Nelson · CC0 · Wikimedia Commons ↗

Verbatim

e0

“Transcriptome analysis of S. enterica cells that colonized D. dadantii-infected lettuce and cilantro leaves revealed a clear shift toward anaerobic metabolism”

✓ located verbatim in the source · abstract, characters 540–698 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Salmonella on infected lettuce and cilantro leaves shifted toward catabolism of substrates released by plant cell degradation.

Taxon
lettuce and cilantroCoriandrum sativumLactuca sativae0
Interactor
S. entericaSalmonella entericae0other
Outcome
catabolism of substratese0
Direction
shift towarde0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Coriandrum sativum
Coriandrum sativum · TaxonThamizhpparithi Maari · CC BY-SA 3.0 · Wikimedia Commons ↗
Lactuca sativa
Lactuca sativa · Taxonen:User:Geographer · CC BY 1.0 · Wikimedia Commons ↗
Salmonella enterica
Salmonella enterica · InteractorCenters for Disease Control and Prevention · Public domain · Wikimedia Commons ↗

Verbatim

e0

“Transcriptome analysis of S. enterica cells that colonized D. dadantii-infected lettuce and cilantro leaves revealed a clear shift toward anaerobic metabolism and catabolism of substrates that are available due to the degradation of plant cells by the pectinolytic pathogen”

✓ located verbatim in the source · abstract, characters 540–813 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Twenty-nine percent of genes upregulated in cilantro macerates were also upregulated in chicken intestine.

Outcome
genes that were upregulated in cilantro maceratese0
Direction
upregulatede0
Value
Twenty-nine percente0
Setting
chicken intestinee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Coriandrum sativum
Coriandrum sativum · TaxonThamizhpparithi Maari · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Twenty-nine percent of the genes that were upregulated in cilantro macerates were also previously observed to have increased expression levels in the chicken intestine”

✓ located verbatim in the source · abstract, characters 815–982 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Multiple genes induced in soft rot lesions are involved in colonization of mouse, pig and bovine infection models.

Taxon
Lettuce and CilantroCoriandrum sativumLactuca sativat0
Outcome
genes induced in soft rot lesionse0
Direction
inducede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Coriandrum sativum
Coriandrum sativum · TaxonThamizhpparithi Maari · CC BY-SA 3.0 · Wikimedia Commons ↗
Lactuca sativa
Lactuca sativa · Taxonen:User:Geographer · CC BY 1.0 · Wikimedia Commons ↗

Verbatim

e0

“multiple genes induced in soft rot lesions are also involved in the colonization of mouse, pig, and bovine models of host infection”

✓ located verbatim in the source · abstract, characters 997–1128 · show in text ↑
t0

“Lettuce and Cilantro”

✓ located verbatim in the source · title, characters 32–52 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Ethanolamine and propanediol utilization operons and the cobalamin synthesis operon were most highly upregulated in lettuce and cilantro lesions.

Taxon
lettuce and cilantroCoriandrum sativumLactuca sativae0
Outcome
operons for ethanolamine and propanediol utilization as well as for the synthesis of cobalamine0
Direction
most highly upregulatede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Coriandrum sativum
Coriandrum sativum · TaxonThamizhpparithi Maari · CC BY-SA 3.0 · Wikimedia Commons ↗
Lactuca sativa
Lactuca sativa · Taxonen:User:Geographer · CC BY 1.0 · Wikimedia Commons ↗

Verbatim

e0

“the operons for ethanolamine and propanediol utilization as well as for the synthesis of cobalamin, a cofactor in these pathways, were the most highly upregulated genes in lettuce and cilantro lesions”

✓ located verbatim in the source · abstract, characters 1149–1349 · show in text ↑
Observationobservedoriginal resultnegativesignificant (as stated)measured

Claim · model-written summary

In macerated cilantro, the LT2 propanediol utilization mutant had a 10-fold lower population than wild type.

Outcome
population sizes of mutants deficient in propanediol utilizatione0
Direction
lowere0
Value
10-e0
Qualifier
P < 0.0002e0
Comparator
wild-type straine0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Coriandrum sativum
Coriandrum sativum · TaxonThamizhpparithi Maari · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“population sizes of mutants deficient in propanediol utilization or cobalamin synthesis were 10- and 3-fold lower, respectively, than those of the wild-type strain in macerated cilantro (P < 0.0002)”

✓ located verbatim in the source · abstract, characters 1381–1579 · show in text ↑
Observationobservedoriginal resultnegativesignificant (as stated)measured

Claim · model-written summary

In macerated cilantro, the LT2 cobalamin synthesis mutant had a 3-fold lower population than wild type.

Outcome
population sizes of mutants deficient in propanediol utilization or cobalamin synthesise0
Direction
lowere0
Value
3-folde0
Qualifier
P < 0.0002e0
Comparator
wild-type straine0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Coriandrum sativum
Coriandrum sativum · TaxonThamizhpparithi Maari · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“population sizes of mutants deficient in propanediol utilization or cobalamin synthesis were 10- and 3-fold lower, respectively, than those of the wild-type strain in macerated cilantro (P < 0.0002)”

✓ located verbatim in the source · abstract, characters 1381–1579 · show in text ↑
Observationobservedoriginal resultno effectmeasured

Claim · model-written summary

The corresponding SL1344 mutants behaved like their parental strain.

Outcome
such mutants behaved similarly to the parental straine0
Comparator
parental straine0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Coriandrum sativum
Coriandrum sativum · TaxonThamizhpparithi Maari · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“in strain SL1344, such mutants behaved similarly to the parental strain”

✓ located verbatim in the source · abstract, characters 1581–1652 · show in text ↑
t0

“Cilantro”

✓ located verbatim in the source · title, characters 44–52 · show in text ↑