Paper · 2016 · cIRcle (University of British Columbia)

Hybridization in Helianthus : the genomic profiles of potential and confirmed sunflower hybrid species

Owens, Gregory Lawrence

11
claims
19
verbatim quotes
0
citations
2
research areas
✓
Open access

Abstract

Hybridization is an important evolutionary force that acts in both constructive and destructive ways. It can both swamp out rare species and create new ones. To better understand these effects I studied hybridization within the sunflower genus Helianthus from three angles. First, I used a rich literature of artificial crossing experiments in Helianthus and Madiinae to ask how fast reproductive isolation evolves and what features affect its accumulation. I show that hybrid sterility can evolve quickly and is faster in annuals than in perennials. I then examine a classic case of introgression involving Helianthus bolanderi. I use modern genomic tools to show that it is not of hybrid origin and likely not a separate species from its congener H. exilis. We do however find introgression with the invading species, H. annuus. In agreement with theory, we find that gene flow is mainly into the invading species. Lastly, I use transcriptomic data for three established homoploid hybrid species, H. anomalus, H. deserticola, and H. paradoxus, and their parents H. annuus and H. petiolaris to map the genomic composition of hybrid species. I show that composition is even or biased towards H. petiolaris. Hybrid genomes are highly recombined but are more similar in genomic composition than expected by chance, suggesting the work of selection. Furthermore, although analyses of genetic distance between the hybrid species and their parents suggests that the hybrids are older than previously appreciated, they do not appear to be fully stabilized. Lastly two of the species, H. anomalus and H. deserticola, may share a common origin. Future directions include mapping introgression in H. annuus, and modeling parental block size to determine the number of loci and strength of selection during hybrid speciation.

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Claims 11

Observationobservedoriginal resultmeasured

Claim · model-written summary

Hybrid sterility evolved quickly and faster in annuals than perennials.

Taxon
Helianthus and MadiinaeHelianthusMadiinaee1
Outcome
hybrid sterilitye0
Direction
fastere0
Comparator
perennialse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Helianthus
Helianthus · Taxon · picture of the genus (one of its species)Արարատ Թրվանց · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“hybrid sterility can evolve quickly and is faster in annuals than in perennials”

✓ located verbatim in the source · abstract, characters 470–549 · show in text ↑
e1

“artificial crossing experiments in Helianthus and Madiinae”

✓ located verbatim in the source · abstract, characters 309–367 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Helianthus bolanderi was not supported as a hybrid-origin species.

Taxon
Helianthus bolanderiHelianthus bolanderie0
Outcome
not of hybrid origine0

Not reportedDirection

Verbatim

e0

“Helianthus bolanderi. I use modern genomic tools to show that it is not of hybrid origin”

✓ located verbatim in the source · abstract, characters 608–696 · show in text ↑
Observationauthor interpretationoriginal resultmeasured

Claim · model-written summary

Helianthus bolanderi was likely not separate from H. exilis.

Taxon
Helianthus bolanderiHelianthus bolanderie0
Outcome
likely not a separate species from its congener H. exilise0

Not reportedDirection

Verbatim

e0

“Helianthus bolanderi. I use modern genomic tools to show that it is not of hybrid origin and likely not a separate species from its congener H. exilis”

✓ located verbatim in the source · abstract, characters 608–758 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Introgression with invading H. annuus was found.

Taxon
Helianthus bolanderiHelianthus bolanderie1
Outcome
introgression with the invading species, H. annuuse0

Not reportedDirection

Verbatim

e0

“We do however find introgression with the invading species, H. annuus”

✓ located verbatim in the source · abstract, characters 760–829 · show in text ↑
e1

“Helianthus bolanderi”

✓ located verbatim in the source · abstract, characters 608–628 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Gene flow mainly entered the invading species.

Taxon
H. annuusHelianthus annuuse1
Outcome
gene flow is mainly into the invading speciese0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Helianthus annuus
Helianthus annuus · TaxonJon Sullivan · Public domain · Wikimedia Commons ↗

Verbatim

e0

“gene flow is mainly into the invading species”

✓ located verbatim in the source · abstract, characters 870–915 · show in text ↑
e1

“invading species, H. annuus”

✓ located verbatim in the source · abstract, characters 802–829 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Hybrid species genome composition was even or biased toward H. petiolaris.

Taxon
H. anomalus, H. deserticola, and H. paradoxusHelianthus anomalusHelianthus deserticolaHelianthus paradoxuse1
Outcome
compositione0
Direction
biased towardse0
Comparator
H. petiolarise0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Helianthus anomalus
Helianthus anomalus · TaxonKenraiz · CC BY-SA 4.0 · Wikimedia Commons ↗
Helianthus deserticola
Helianthus deserticola · Taxon(c) Matt Berger, some rights reserved (CC BY) · CC BY 4.0 · Wikimedia Commons ↗
Helianthus paradoxus
Helianthus paradoxus · TaxonUnknown author Unknown author · Public domain · Wikimedia Commons ↗

Verbatim

e0

“composition is even or biased towards H. petiolaris”

✓ located verbatim in the source · abstract, characters 1154–1205 · show in text ↑
e1

“three established homoploid hybrid species, H. anomalus, H. deserticola, and H. paradoxus”

✓ located verbatim in the source · abstract, characters 955–1044 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Hybrid genomes were highly recombined.

Taxon
H. anomalus, H. deserticola, and H. paradoxusHelianthus anomalusHelianthus deserticolaHelianthus paradoxuse1
Outcome
Hybrid genomes are highly recombinede0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Helianthus anomalus
Helianthus anomalus · TaxonKenraiz · CC BY-SA 4.0 · Wikimedia Commons ↗
Helianthus deserticola
Helianthus deserticola · Taxon(c) Matt Berger, some rights reserved (CC BY) · CC BY 4.0 · Wikimedia Commons ↗
Helianthus paradoxus
Helianthus paradoxus · TaxonUnknown author Unknown author · Public domain · Wikimedia Commons ↗

Verbatim

e0

“Hybrid genomes are highly recombined”

✓ located verbatim in the source · abstract, characters 1207–1243 · show in text ↑
e1

“H. anomalus, H. deserticola, and H. paradoxus”

✓ located verbatim in the source · abstract, characters 999–1044 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Hybrid genomes were more compositionally similar than expected by chance.

Taxon
H. anomalus, H. deserticola, and H. paradoxusHelianthus anomalusHelianthus deserticolaHelianthus paradoxuse1
Outcome
genomic compositione0
Direction
more similare0
Comparator
expected by chancee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Helianthus anomalus
Helianthus anomalus · TaxonKenraiz · CC BY-SA 4.0 · Wikimedia Commons ↗
Helianthus deserticola
Helianthus deserticola · Taxon(c) Matt Berger, some rights reserved (CC BY) · CC BY 4.0 · Wikimedia Commons ↗
Helianthus paradoxus
Helianthus paradoxus · TaxonUnknown author Unknown author · Public domain · Wikimedia Commons ↗

Verbatim

e0

“more similar in genomic composition than expected by chance”

✓ located verbatim in the source · abstract, characters 1252–1311 · show in text ↑
e1

“H. anomalus, H. deserticola, and H. paradoxus”

✓ located verbatim in the source · abstract, characters 999–1044 · show in text ↑
Observationauthor interpretationoriginal resultmeasured

Claim · model-written summary

Genetic distance suggested the hybrid species were older than previously thought.

Taxon
H. anomalus, H. deserticola, and H. paradoxusHelianthus anomalusHelianthus deserticolaHelianthus paradoxuse1
Outcome
hybrids are oldere0
Direction
oldere0
Comparator
previously appreciatede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Helianthus anomalus
Helianthus anomalus · TaxonKenraiz · CC BY-SA 4.0 · Wikimedia Commons ↗
Helianthus deserticola
Helianthus deserticola · Taxon(c) Matt Berger, some rights reserved (CC BY) · CC BY 4.0 · Wikimedia Commons ↗
Helianthus paradoxus
Helianthus paradoxus · TaxonUnknown author Unknown author · Public domain · Wikimedia Commons ↗

Verbatim

e0

“the hybrids are older than previously appreciated”

✓ located verbatim in the source · abstract, characters 1457–1506 · show in text ↑
e1

“H. anomalus, H. deserticola, and H. paradoxus”

✓ located verbatim in the source · abstract, characters 999–1044 · show in text ↑
Observationauthor interpretationoriginal resultmeasured

Claim · model-written summary

The hybrid species did not appear fully stabilized.

Taxon
H. anomalus, H. deserticola, and H. paradoxusHelianthus anomalusHelianthus deserticolaHelianthus paradoxuse1
Outcome
do not appear to be fully stabilizede0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Helianthus anomalus
Helianthus anomalus · TaxonKenraiz · CC BY-SA 4.0 · Wikimedia Commons ↗
Helianthus deserticola
Helianthus deserticola · Taxon(c) Matt Berger, some rights reserved (CC BY) · CC BY 4.0 · Wikimedia Commons ↗
Helianthus paradoxus
Helianthus paradoxus · TaxonUnknown author Unknown author · Public domain · Wikimedia Commons ↗

Verbatim

e0

“they do not appear to be fully stabilized”

✓ located verbatim in the source · abstract, characters 1508–1549 · show in text ↑
e1

“H. anomalus, H. deserticola, and H. paradoxus”

✓ located verbatim in the source · abstract, characters 999–1044 · show in text ↑
Observationauthor interpretationoriginal resultmeasured

Claim · model-written summary

H. anomalus and H. deserticola may share a common origin.

Taxon
H. anomalus and H. deserticolaHelianthus anomalusHelianthus deserticolae0
Outcome
may share a common origine0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Helianthus anomalus
Helianthus anomalus · TaxonKenraiz · CC BY-SA 4.0 · Wikimedia Commons ↗
Helianthus deserticola
Helianthus deserticola · Taxon(c) Matt Berger, some rights reserved (CC BY) · CC BY 4.0 · Wikimedia Commons ↗

Verbatim

e0

“H. anomalus and H. deserticola, may share a common origin”

✓ located verbatim in the source · abstract, characters 1578–1635 · show in text ↑