Paper · 2018 · Iranian Journal of Biotechnology

Cloning and Expression Analysis of ZmERD3 Gene From Zea mays

Xiaoqing Song; Qiaoyun weng; Yanmin Zhao; et al.

9
claims
20
verbatim quotes
10
citations
1
research areas
✓
Open access

Abstract

Background: Stresses (such as drought, salt, viruses, and others) seriously affect plant productivity. To cope with these threats, plants express a large number of genes, including several members of ERD (early responsive to dehydration) genes to synthesize and assemble adaptive molecules. But, the function of ERD3 gene hasn’t been known so far.Objectives: The purpose of the present study was to clone the stress-resistance gene: ZmERD3, and to analyze its expression pattern in the maize plant organs at different stages and under various stress treatments.Materials and Methods: MaizeGDB database search together with the bioinformatics analysis led to the identification of ZmERD3 gene in Zea mays. The cDNA sequence and promoter of ZmERD3 gene were obtained through PCR. Bioinformatics analysis was performed through online tools. The tissue-specific expression profile of the ZmERD3 gene in maize plant was carried out using the quantitative real time PCR (qRT-PCR) technique and its expression pattern in response to stress treatments (such as PEG, NaCl, ABA, and low temperature) was also analyzed through qRT-PCR method.Results: Based on the homology alignment with AtERD3 (XP_002867953) in MaizeGDB (http://www. maizegdb.org/), the cDNA sequence and promoter region of the ZmERD3 gene were obtained. The bioinformatic analysis showed that ZmERD3 protein has one specific hit of methyltransferase and a high probability of location in the cytoplasm, and there are many cis-regulatory elements responsive to light, heat, cold, dehydration, as well as other stresses in its promoter sequence. Expression analysis revealed that the amount of ZmERD3 mRNA is different in all indicated organs of the maize plant. In addition, the ZmERD3 expression could be induced by abiotic stress treatments. Compared to the control, treatment with NaCl or PEG-6000 could significantly enhance the expression ability of ZmERD3 gene. As well, its expression level was increased about 20 times above the control after exposure to NaCl and PEG-6000 treatments for 3-6 h.Conclusions: One putative methyltransferase gene, ZmERD3 was cloned. ZmERD3 expression exhibited an obvious tissue-specificity, and its expression could make a significant response to NaCl and PEG-6000 treatments.

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Claims 9

Observationobservedoriginal resultmeasured

Claim · model-written summary

The ZmERD3 cDNA sequence and promoter were obtained.

Taxon
Zea maysZea mayst0
Gene
ZmERD3 genee0
Outcome
cDNA sequence and promoter regione0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“the cDNA sequence and promoter region of the ZmERD3 gene were obtained”

✓ located verbatim in the source · abstract, characters 1240–1310 · show in text ↑
t0

“Zea mays”

✓ located verbatim in the source · title, characters 52–60 · show in text ↑
Observationobservedoriginal resultsimulated

Claim · model-written summary

Bioinformatics predicted a methyltransferase hit for ZmERD3.

Taxon
Zea maysZea mayst0
Gene
ZmERD3 proteine0
Outcome
one specific hit of methyltransferasee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“ZmERD3 protein has one specific hit of methyltransferase”

✓ located verbatim in the source · abstract, characters 1351–1407 · show in text ↑
t0

“Zea mays”

✓ located verbatim in the source · title, characters 52–60 · show in text ↑
Observationobservedoriginal resultsimulated

Claim · model-written summary

Bioinformatics predicted a high probability of cytoplasmic localization for ZmERD3.

Taxon
Zea maysZea mayst0
Gene
ZmERD3 proteine0
Outcome
high probability of location in the cytoplasme0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“ZmERD3 protein has one specific hit of methyltransferase and a high probability of location in the cytoplasm”

✓ located verbatim in the source · abstract, characters 1351–1459 · show in text ↑
t0

“Zea mays”

✓ located verbatim in the source · title, characters 52–60 · show in text ↑
Observationobservedoriginal resultsimulated

Claim · model-written summary

The ZmERD3 promoter had cis-regulatory elements responsive to several environmental stresses.

Taxon
Zea maysZea mayst0
Gene
ZmERD3e1
Outcome
cis-regulatory elements responsive to light, heat, cold, dehydration, as well as other stressese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“there are many cis-regulatory elements responsive to light, heat, cold, dehydration, as well as other stresses in its promoter sequence”

✓ located verbatim in the source · abstract, characters 1465–1600 · show in text ↑
e1

“ZmERD3 protein”

✓ located verbatim in the source · abstract, characters 1351–1365 · show in text ↑
t0

“Zea mays”

✓ located verbatim in the source · title, characters 52–60 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

ZmERD3 mRNA abundance differed across maize organs.

Taxon
maizeZea mayse0
Organ / stage
organse0
Gene
ZmERD3e0
Outcome
amount of ZmERD3 mRNAe0
Direction
differente0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“the amount of ZmERD3 mRNA is different in all indicated organs of the maize plant”

✓ located verbatim in the source · abstract, characters 1636–1717 · show in text ↑
Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

NaCl significantly enhanced ZmERD3 expression compared with control.

Taxon
Zea maysZea mayst0
Treatment
NaCle0
Gene
ZmERD3 genee0
Outcome
expression abilitye0
Direction
enhancee0
Comparator
controle0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Compared to the control, treatment with NaCl or PEG-6000 could significantly enhance the expression ability of ZmERD3 gene”

✓ located verbatim in the source · abstract, characters 1801–1923 · show in text ↑
t0

“Zea mays”

✓ located verbatim in the source · title, characters 52–60 · show in text ↑
Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

PEG-6000 significantly enhanced ZmERD3 expression compared with control.

Taxon
Zea maysZea mayst0
Treatment
PEG-6000e0
Gene
ZmERD3 genee0
Outcome
expression abilitye0
Direction
enhancee0
Comparator
controle0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Compared to the control, treatment with NaCl or PEG-6000 could significantly enhance the expression ability of ZmERD3 gene”

✓ located verbatim in the source · abstract, characters 1801–1923 · show in text ↑
t0

“Zea mays”

✓ located verbatim in the source · title, characters 52–60 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

The authors report about a 20-fold rise in ZmERD3 expression after 3–6 hours of NaCl exposure.

Taxon
Zea maysZea mayst0
Treatment
NaCle0
Gene
ZmERD3e1
Outcome
expression levele0
Direction
increasede0
Value
about 20 timese0
Qualifier
3-6 he0
Comparator
controle0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“its expression level was increased about 20 times above the control after exposure to NaCl and PEG-6000 treatments for 3-6 h”

✓ located verbatim in the source · abstract, characters 1934–2058 · show in text ↑
e1

“ZmERD3 expression could be induced”

✓ located verbatim in the source · abstract, characters 1736–1770 · show in text ↑
t0

“Zea mays”

✓ located verbatim in the source · title, characters 52–60 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

The authors report about a 20-fold rise in ZmERD3 expression after 3–6 hours of PEG-6000 exposure.

Taxon
Zea maysZea mayst0
Treatment
PEG-6000e0
Gene
ZmERD3e1
Outcome
expression levele0
Direction
increasede0
Value
about 20 timese0
Qualifier
3-6 he0
Comparator
controle0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“its expression level was increased about 20 times above the control after exposure to NaCl and PEG-6000 treatments for 3-6 h”

✓ located verbatim in the source · abstract, characters 1934–2058 · show in text ↑
e1

“ZmERD3 expression could be induced”

✓ located verbatim in the source · abstract, characters 1736–1770 · show in text ↑
t0

“Zea mays”

✓ located verbatim in the source · title, characters 52–60 · show in text ↑

sodium chloride · molecular: expression · Zea mays (maize)Positive and negative results

10 papers: 7 positive, 3 negative or no effect

6 papers in the same direction as this paper · 2 in the opposite direction · 1 reporting no difference from an alternative

  1. negative
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  3. no effect

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drought · molecular: expression · Zea mays (maize)Positive and negative results

65 papers: 43 positive, 22 negative or no effect

42 papers in the same direction as this paper · 22 in the opposite direction

  1. positive
  2. no effect
  3. negative

61 papers more in this group

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Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.