Abstract
Capsicum annuum is one of the oldest domesticated crops in the Americas, which is also the most widely grown spice crop in the world. The complete chloroplast genome of C. annuum has been assembled and annotated in this paper. Its length was 156,781 bp, containing a large single-copy region of 87,367 bp, a small single-copy region of 17,850 bp, and a pair of IR regions of 25,782 bp in each. The whole chloroplast genome of C. annuum contains 135 genes, including 89 protein-coding genes (PCGs), 38 transfer RNA genes (tRNAs), and 8 ribosome RNA genes (rRNAs). The overall nucleotide composition is: A of 30.8%, T of 31.5%, C of 19.1% and G of 18.6%, with a total GC content of the chloroplast genome 37.7% and AT of 62.3%. Phylogenetic relationship analysis was based on 10 plant species using the maximum-likelihood (ML) methods, which showed that the position of C. annuum clustered with C. galapagoense.
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Claims 15
Claim · model-written summary
The assembled chloroplast genome was 156,781 bp.
- Taxon
- C. annuum
Capsicum annuume0 - Outcome
- chloroplast genomee0
- Value
- 156,781 bpe0
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e0“The complete chloroplast genome of C. annuum has been assembled and annotated in this paper. Its length was 156,781 bp”
Claim · model-written summary
large single-copy region was 87,367 bp.
- Taxon
- Capsicum annuumCapsicum annuumt0
- Outcome
- large single-copy regione0
- Value
- 87,367 bpe0
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
t0“Capsicum annuum (Solanaceae)”
e0“a large single-copy region of 87,367 bp”
Claim · model-written summary
small single-copy region was 17,850 bp.
- Taxon
- Capsicum annuumCapsicum annuumt0
- Outcome
- small single-copy regione0
- Value
- 17,850 bpe0
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
t0“Capsicum annuum (Solanaceae)”
e0“a small single-copy region of 17,850 bp”
Claim · model-written summary
IR regions was 25,782 bp.
- Taxon
- Capsicum annuumCapsicum annuumt0
- Outcome
- IR regionse0
- Value
- 25,782 bpe0
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
t0“Capsicum annuum (Solanaceae)”
e0“a pair of IR regions of 25,782 bp in each”
Claim · model-written summary
protein-coding genes was 89 protein-coding genes.
- Taxon
- Capsicum annuumCapsicum annuumt0
- Outcome
- protein-coding genese0
- Value
- 89 protein-coding genese0
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
t0“Capsicum annuum (Solanaceae)”
e0“89 protein-coding genes (PCGs)”
Claim · model-written summary
transfer RNA genes was 38 transfer RNA genes.
- Taxon
- Capsicum annuumCapsicum annuumt0
- Outcome
- transfer RNA genese0
- Value
- 38 transfer RNA genese0
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
t0“Capsicum annuum (Solanaceae)”
e0“38 transfer RNA genes (tRNAs)”
Claim · model-written summary
ribosome RNA genes was 8 ribosome RNA genes.
- Taxon
- Capsicum annuumCapsicum annuumt0
- Outcome
- ribosome RNA genese0
- Value
- 8 ribosome RNA genese0
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
t0“Capsicum annuum (Solanaceae)”
e0“8 ribosome RNA genes (rRNAs)”
Claim · model-written summary
A was 30.8%.
- Taxon
- Capsicum annuumCapsicum annuumt0
- Outcome
- Ae0
- Value
- 30.8%e0
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
t0“Capsicum annuum (Solanaceae)”
e0“A of 30.8%”
Claim · model-written summary
T was 31.5%.
- Taxon
- Capsicum annuumCapsicum annuumt0
- Outcome
- Te0
- Value
- 31.5%e0
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
t0“Capsicum annuum (Solanaceae)”
e0“T of 31.5%”
Claim · model-written summary
C was 19.1%.
- Taxon
- Capsicum annuumCapsicum annuumt0
- Outcome
- Ce0
- Value
- 19.1%e0
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
t0“Capsicum annuum (Solanaceae)”
e0“C of 19.1%”
Claim · model-written summary
G was 18.6%.
- Taxon
- Capsicum annuumCapsicum annuumt0
- Outcome
- Ge0
- Value
- 18.6%e0
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
t0“Capsicum annuum (Solanaceae)”
e0“G of 18.6%”
Claim · model-written summary
GC content was 37.7%.
- Taxon
- Capsicum annuumCapsicum annuumt0
- Outcome
- GC contente0
- Value
- 37.7%e0
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
t0“Capsicum annuum (Solanaceae)”
e0“GC content of the chloroplast genome 37.7%”
Claim · model-written summary
AT was 62.3%.
- Taxon
- Capsicum annuumCapsicum annuumt0
- Outcome
- ATe0
- Value
- 62.3%e0
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
t0“Capsicum annuum (Solanaceae)”
e0“AT of 62.3%”
Claim · model-written summary
The genome contains 135 genes.
- Taxon
- C. annuumCapsicum annuume0
- Outcome
- genese0
- Value
- 135 genese0
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e0“The whole chloroplast genome of C. annuum contains 135 genes”
Claim · model-written summary
C. annuum clustered with C. galapagoense.
- Taxon
- C. annuumCapsicum annuume0
- Outcome
- clustered with C. galapagoensee0
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e0“the position of C. annuum clustered with C. galapagoense”