Paper · 2021 · Crop Protection

Prevalence and molecular characterization of Turkish isolates of the rose viruses

Ali Karanfil

13
claims
25
verbatim quotes
16
citations
2
research areas
✓
Open access · cc-by-nc-nd

Abstract

Roses are among the most important ornamental plants in the world. There are many biotic disease factors that cause damage to this important plant. The most important group among these is virus diseases. However, of the studies about rose viruses conducted worldwide, those in Turkey are limited. With the aim of determining the prevalence and genetic diversity of rose viruses, 332 rose plants showing virus and virus-like symptoms were collected in 14 provinces from four different geographic regions of Turkey. The samples were tested to determine the infection of nine different viruses infecting rose plants. As a result of the tests, prunus necrotic ringspot (PNRSV), rose cryptic virus-1 (RCV-1), rose spring dwarf-associated virus (RSDaV), rose yellow vein virus (RYVV), and apple mosaic virus (ApMV) infections were detected. It was determined that 94.27% of the samples were infected with at least one virus infection. While the virus causing the most infection was found to be PNRSV, the least one was determined as ApMV. With this result, PNRSV is determined as a significant virus disease for rose plants in Turkey. Based on their geographical origins, 25 PNRSV and RCV-1 isolates, 15 RSDaV and RYVV isolates, and 10 ApMV isolates were selected for further analysis and their partial genetic diversity was investigated. As a result of these analyzes, it was determined that PNRSV, RCV-1, and RSDaV isolates showed a high-sequence homology with each other and with world isolates. Rose ApMV isolates were found to form separate groups phylogenetically. RYVV, which is known to exist in a very limited number of countries, has been found to have up to 10% genetic differences and phylogenetically, three different groups were determined. Furthermore, to the best of our knowledge, these are the first reports of RCV-1 and RSDaV in Turkey. It was also found that Turkey is still free of rose rosette virus. Therefore, quarantine measurements should continue to be strictly enforced.

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Claims 13

Observationobservedoriginal resultmeasured

Claim · model-written summary

94.27% of the rose samples were infected with at least one virus.

Taxon
Rosese0
Outcome
infected with at least one viruse2
Value
94.27%e2

Verbatim

e0

“Roses are among the most important ornamental plants in the world”

✓ located verbatim in the source · abstract, characters 0–65 · show in text ↑
e2

“It was determined that 94.27% of the samples were infected with at least one virus infection”

✓ located verbatim in the source · abstract, characters 835–927 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

PNRSV caused the most virus infections in roses.

Taxon
Rosese0
Interactor
PNRSVPrunus necrotic ringspot viruse3pathogen
Outcome
infectione3
Direction
moste3

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Prunus necrotic ringspot virus
Prunus necrotic ringspot virus · InteractorMalcolm Manners from Lakeland FL, USA · CC BY 2.0 · Wikimedia Commons ↗

Verbatim

e0

“Roses are among the most important ornamental plants in the world”

✓ located verbatim in the source · abstract, characters 0–65 · show in text ↑
e3

“While the virus causing the most infection was found to be PNRSV, the least one was determined as ApMV”

✓ located verbatim in the source · abstract, characters 929–1031 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

ApMV caused the least virus infections in roses.

Taxon
Rosese0
Interactor
ApMVIlarvirus ApMVe3pathogen
Outcome
infectione3
Direction
leaste3

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Ilarvirus ApMV
Ilarvirus ApMV · InteractorJuan de Vojníkov · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Roses are among the most important ornamental plants in the world”

✓ located verbatim in the source · abstract, characters 0–65 · show in text ↑
e3

“While the virus causing the most infection was found to be PNRSV, the least one was determined as ApMV”

✓ located verbatim in the source · abstract, characters 929–1031 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

PNRSV and RCV-1 infections were detected in rose plants, with RSDaV also detected.

Taxon
Rosese0
Interactor
prunus necrotic ringspot (PNRSV)Prunus necrotic ringspot viruse1pathogen
Second interactor
rose cryptic virus-1 (RCV-1)e1pathogen
Outcome
infections were detectede1
Qualifier
rose spring dwarf-associated virus (RSDaV)e1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Prunus necrotic ringspot virus
Prunus necrotic ringspot virus · InteractorMalcolm Manners from Lakeland FL, USA · CC BY 2.0 · Wikimedia Commons ↗

Verbatim

e0

“Roses are among the most important ornamental plants in the world”

✓ located verbatim in the source · abstract, characters 0–65 · show in text ↑
e1

“As a result of the tests, prunus necrotic ringspot (PNRSV), rose cryptic virus-1 (RCV-1), rose spring dwarf-associated virus (RSDaV), rose yellow vein virus (RYVV), and apple mosaic virus (ApMV) infections were detected”

✓ located verbatim in the source · abstract, characters 614–833 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

RYVV and ApMV infections were detected in rose plants.

Taxon
Rosese0
Interactor
rose yellow vein virus (RYVV)Rose yellow vein viruse1pathogen
Second interactor
apple mosaic virus (ApMV)Ilarvirus ApMVe1pathogen
Outcome
infections were detectede1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Ilarvirus ApMV
Ilarvirus ApMV · Second interactorJuan de Vojníkov · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Roses are among the most important ornamental plants in the world”

✓ located verbatim in the source · abstract, characters 0–65 · show in text ↑
e1

“As a result of the tests, prunus necrotic ringspot (PNRSV), rose cryptic virus-1 (RCV-1), rose spring dwarf-associated virus (RSDaV), rose yellow vein virus (RYVV), and apple mosaic virus (ApMV) infections were detected”

✓ located verbatim in the source · abstract, characters 614–833 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

PNRSV, RCV-1 and RSDaV isolates showed high sequence homology with each other and with world isolates.

Taxon
Rosese0
Interactor
PNRSVPrunus necrotic ringspot viruse4pathogen
Second interactor
RCV-1e4pathogen
Outcome
sequence homologye4
Direction
highe4
Qualifier
with each other and with world isolatese4

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Prunus necrotic ringspot virus
Prunus necrotic ringspot virus · InteractorMalcolm Manners from Lakeland FL, USA · CC BY 2.0 · Wikimedia Commons ↗

Verbatim

e0

“Roses are among the most important ornamental plants in the world”

✓ located verbatim in the source · abstract, characters 0–65 · show in text ↑
e4

“As a result of these analyzes, it was determined that PNRSV, RCV-1, and RSDaV isolates showed a high-sequence homology with each other and with world isolates”

✓ located verbatim in the source · abstract, characters 1333–1491 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

ApMV isolates from roses formed separate groups phylogenetically.

Taxon
Rosese0
Interactor
ApMVIlarvirus ApMVe5pathogen
Outcome
form separate groups phylogeneticallye5

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Ilarvirus ApMV
Ilarvirus ApMV · InteractorJuan de Vojníkov · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Roses are among the most important ornamental plants in the world”

✓ located verbatim in the source · abstract, characters 0–65 · show in text ↑
e5

“Rose ApMV isolates were found to form separate groups phylogenetically”

✓ located verbatim in the source · abstract, characters 1493–1563 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

RYVV isolates showed up to 10% genetic differences.

Taxon
Rosese0
Interactor
RYVVe6pathogen
Outcome
genetic differencese6
Value
up to 10%e6

Verbatim

e0

“Roses are among the most important ornamental plants in the world”

✓ located verbatim in the source · abstract, characters 0–65 · show in text ↑
e6

“RYVV, which is known to exist in a very limited number of countries, has been found to have up to 10% genetic differences and phylogenetically, three different groups were determined”

✓ located verbatim in the source · abstract, characters 1565–1747 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

RYVV isolates were determined to form three different phylogenetic groups.

Taxon
Rosese0
Interactor
RYVVe6pathogen
Outcome
three different groups were determinede6
Value
threee6

Verbatim

e0

“Roses are among the most important ornamental plants in the world”

✓ located verbatim in the source · abstract, characters 0–65 · show in text ↑
e6

“RYVV, which is known to exist in a very limited number of countries, has been found to have up to 10% genetic differences and phylogenetically, three different groups were determined”

✓ located verbatim in the source · abstract, characters 1565–1747 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

RCV-1 and RSDaV were first reported in Turkey in roses.

Taxon
Rosese0
Interactor
RCV-1e7pathogen
Second interactor
RSDaVe7pathogen
Outcome
first reportse7
Setting
Turkeye7

Verbatim

e0

“Roses are among the most important ornamental plants in the world”

✓ located verbatim in the source · abstract, characters 0–65 · show in text ↑
e7

“Furthermore, to the best of our knowledge, these are the first reports of RCV-1 and RSDaV in Turkey”

✓ located verbatim in the source · abstract, characters 1749–1848 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Turkey is still free of rose rosette virus.

Taxon
Rosese0
Interactor
rose rosette virusEmaravirus rosaee2pathogen
Outcome
free of rose rosette viruse2
Setting
Turkeye2

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Emaravirus rosae
Emaravirus rosae · InteractorMark Apgar · CC BY 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Roses are among the most important ornamental plants in the world”

✓ located verbatim in the source · abstract, characters 0–65 · show in text ↑
e2

“It was also found that Turkey is still free of rose rosette virus”

✓ located verbatim in the source · abstract, characters 1850–1915 · show in text ↑
Observationauthor interpretationoriginal resultmeasured

Claim · model-written summary

PNRSV is a significant virus disease for rose plants in Turkey.

Taxon
rose plantse1
Interactor
PNRSVPrunus necrotic ringspot viruse1pathogen
Outcome
significant virus disease for rose plantse1
Setting
Turkeye1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Prunus necrotic ringspot virus
Prunus necrotic ringspot virus · InteractorMalcolm Manners from Lakeland FL, USA · CC BY 2.0 · Wikimedia Commons ↗

Verbatim

e1

“With this result, PNRSV is determined as a significant virus disease for rose plants in Turkey”

✓ located verbatim in the source · abstract, characters 1033–1127 · show in text ↑
Recommendationauthor interpretationoriginal resultbasis n/a

Claim · model-written summary

Quarantine measures against rose viruses should continue to be strictly enforced in Turkey.

Taxon
Rosese0
Outcome
quarantine measurementse2

Verbatim

e0

“Roses are among the most important ornamental plants in the world”

✓ located verbatim in the source · abstract, characters 0–65 · show in text ↑
e2

“Therefore, quarantine measurements should continue to be strictly enforced”

✓ located verbatim in the source · abstract, characters 1917–1991 · show in text ↑