Abstract
Here, we report the first complete chloroplast (cp) genome of Cinchona officinalis. This cp genome has a 156,984 bp in length with typical quadripartite structure, containing a large single copy (LSC) region (83,929 bp) and an 18,051 bp small single-copy (SSC) region, separated by two inverted repeat (IR) regions (27,502 bp). The total GC content was 37.75%. Quina tree chloroplast genome possesses 135 genes that consisted of 89 protein-coding genes, 37 tRNA, eight rRNA, and one pseudogene. Phylogenetic analysis showed that C. officinalis is sister to C. pubescens and sister to them is Isertia laevis; all belong to the Cinchonoideae sub-family.
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Claims 11
Claim · model-written summary
The cp genome measured 156,984 bp.
- Taxon
- Cinchona officinalis
Cinchona officinalist0 - Outcome
- cp genomee0
- Value
- 156,984 bpe0
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e0“This cp genome has a 156,984 bp in length”
t0“Cinchona officinalis”
Claim · model-written summary
The large single copy (LSC) region measured 83,929 bp.
- Taxon
- Cinchona officinalisCinchona officinalist0
- Outcome
- large single copy (LSC) regione0
- Value
- 83,929 bpe0
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e0“large single copy (LSC) region (83,929 bp)”
t0“Cinchona officinalis”
Claim · model-written summary
The small single-copy (SSC) region measured 18,051 bp.
- Taxon
- Cinchona officinalisCinchona officinalist0
- Outcome
- small single-copy (SSC) regione0
- Value
- 18,051 bpe0
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e0“an 18,051 bp small single-copy (SSC) region”
t0“Cinchona officinalis”
Claim · model-written summary
The inverted repeat (IR) regions measured 27,502 bp.
- Taxon
- Cinchona officinalisCinchona officinalist0
- Outcome
- inverted repeat (IR) regionse0
- Value
- 27,502 bpe0
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e0“two inverted repeat (IR) regions (27,502 bp)”
t0“Cinchona officinalis”
Claim · model-written summary
The total GC content measured 37.75%.
- Taxon
- Cinchona officinalisCinchona officinalist0
- Outcome
- total GC contente0
- Value
- 37.75%e0
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e0“The total GC content was 37.75%”
t0“Cinchona officinalis”
Claim · model-written summary
The chloroplast genome measured 135 genes.
- Taxon
- Cinchona officinalisCinchona officinalist0
- Outcome
- chloroplast genomee0
- Value
- 135 genese0
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e0“chloroplast genome possesses 135 genes”
t0“Cinchona officinalis”
Claim · model-written summary
The protein-coding genes measured 89 protein-coding genes.
- Taxon
- Cinchona officinalisCinchona officinalist0
- Outcome
- protein-coding genese0
- Value
- 89 protein-coding genese0
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e0“89 protein-coding genes”
t0“Cinchona officinalis”
Claim · model-written summary
The tRNA measured 37 tRNA.
- Taxon
- Cinchona officinalisCinchona officinalist0
- Outcome
- tRNAe0
- Value
- 37 tRNAe0
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e0“37 tRNA”
t0“Cinchona officinalis”
Claim · model-written summary
The rRNA measured eight rRNA.
- Taxon
- Cinchona officinalisCinchona officinalist0
- Outcome
- rRNAe0
- Value
- eight rRNAe0
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e0“eight rRNA”
t0“Cinchona officinalis”
Claim · model-written summary
The pseudogene measured one pseudogene.
- Taxon
- Cinchona officinalisCinchona officinalist0
- Outcome
- pseudogenee0
- Value
- one pseudogenee0
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e0“one pseudogene”
t0“Cinchona officinalis”
Claim · model-written summary
C. officinalis is sister to C. pubescens, and Isertia laevis is sister to that pair.
- Taxon
- C. officinalisCinchona officinalise0
- Outcome
- sister to C. pubescense0
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e0“C. officinalis is sister to C. pubescens and sister to them is Isertia laevis”