Abstract
As a part of phylogenomic study of graminids, we report the complete plastome sequence of Flagellaria indica L. (Flagellariaceae) (NCBI No. MZ504969). This is the first reported complete plastome sequence from the Flagellariaceae. This plastome shows typical quadripartite structure. The plastome size is 161,643 bp, which consists of 88,714 bp large single copy (LSC), 19,065 bp small single-copy (SSC), and 26,932 bp inverted repeat (IR) regions. However, we detected F. indica plastome has a 288 bp small inversion between ycf3 and trnS-GGA. The palindromic repeats of 10 bp (TTCCAATTTC/GAAATTGGAA) were located on the two break points of inversion. F. indica plastome contains 113 genes, including 79 protein-coding, 30 tRNA, and four rRNA genes. Unlike other families of graminids, the functional ycf1 and ycf2 genes exist. Sixteen genes contain one intron and two genes (clpP and ycf3) have two introns. Sixty-two simple sequence repeat (SSR) loci are scattered in the plastome, respectively. The phylogenetic tree shows that Flagellariaceae are the basal sister lineage of other graminid families.
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Claims 8
Claim · model-written summary
The first complete Flagellariaceae plastome sequence was reported.
- Taxon
- Flagellaria indica L.
Flagellaria indicae0 - Outcome
- complete plastome sequencee0
- Value
- MZ504969e0
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e0“we report the complete plastome sequence of Flagellaria indica L. (Flagellariaceae) (NCBI No. MZ504969). This is the first reported complete plastome sequence from the Flagellariaceae”
Claim · model-written summary
The plastome has a typical quadripartite structure and is 161,643 bp.
- Taxon
- Flagellaria indica L.Flagellaria indicat0
- Outcome
- plastome sizee0
- Value
- 161,643 bpe0
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e0“This plastome shows typical quadripartite structure. The plastome size is 161,643 bp”
t0“Flagellaria indica L.”
Claim · model-written summary
A 288 bp inversion occurs between ycf3 and trnS-GGA.
- Taxon
- F. indicaFlagellaria indicae0
- Gene
- ycf3 and trnS-GGAe0
- Outcome
- small inversione0
- Value
- 288 bpe0
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e0“F. indica plastome has a 288 bp small inversion between ycf3 and trnS-GGA”
Claim · model-written summary
The plastome contains 113 genes, including 79 protein-coding, 30 tRNA and four rRNA genes.
- Taxon
- F. indicaFlagellaria indicae0
- Outcome
- genese0
- Value
- 113 genese0
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e0“F. indica plastome contains 113 genes, including 79 protein-coding, 30 tRNA, and four rRNA genes”
Claim · model-written summary
Functional ycf1 and ycf2 genes are present, unlike in other graminid families.
- Taxon
- Flagellaria indica L.Flagellaria indicat0
- Gene
- ycf1 and ycf2e0
- Outcome
- functional ycf1 and ycf2 genes existe0
- Comparator
- other families of graminidse0
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e0“Unlike other families of graminids, the functional ycf1 and ycf2 genes exist”
t0“Flagellaria indica L.”
Claim · model-written summary
Sixteen genes have one intron and two genes have two introns.
- Taxon
- Flagellaria indica L.Flagellaria indicat0
- Outcome
- genes contain one introne0
- Value
- Sixteen genese0
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e0“Sixteen genes contain one intron and two genes (clpP and ycf3) have two introns”
t0“Flagellaria indica L.”
Claim · model-written summary
Sixty-two SSR loci occur in the plastome.
- Taxon
- Flagellaria indica L.Flagellaria indicat0
- Outcome
- simple sequence repeat (SSR) locie0
- Value
- Sixty-twoe0
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e0“Sixty-two simple sequence repeat (SSR) loci are scattered in the plastome”
t0“Flagellaria indica L.”
Claim · model-written summary
Flagellariaceae form the basal sister lineage of other graminid families.
- Taxon
- FlagellariaceaeFlagellariaceaee0
- Outcome
- basal sister lineage of other graminid familiese0
Verbatim
e0“The phylogenetic tree shows that Flagellariaceae are the basal sister lineage of other graminid families”