Paper · 2022 · New Phytologist

Comparative transcriptomics of fungal endophytes in co‐culture with their moss host Dicranum scoparium reveals fungal trophic lability and moss unchanged to slightly increased growth rates

Ko‐Hsuan Chen; Hui‐Ling Liao; A. Elizabeth Arnold; et al.

6
claims
11
verbatim quotes
16
citations
2
research areas
✓
Open access

Abstract

Mosses harbor fungi whose interactions within their hosts remain largely unexplored. Trophic ranges of fungal endophytes from the moss Dicranum scoparium were hypothesized to encompass saprotrophism. This moss is an ideal host to study fungal trophic lability because of its natural senescence gradient, and because it can be grown axenically. Dicranum scoparium was co-cultured with each of eight endophytic fungi isolated from naturally occurring D. scoparium. Moss growth rates, and gene expression levels (RNA sequencing) of fungi and D. scoparium, were compared between axenic and co-culture treatments. Functional lability of two fungal endophytes was tested by comparing their RNA expression levels when colonizing living vs dead gametophytes. Growth rates of D. scoparium were unchanged, or increased, when in co-culture. One fungal isolate (Hyaloscyphaceae sp.) that promoted moss growth was associated with differential expression of auxin-related genes. When grown with living vs dead gametophytes, Coniochaeta sp. switched from having upregulated carbohydrate transporter activity to upregulated oxidation-based degradation, suggesting an endophytism to saprotrophism transition. However, no such transition was detected for Hyaloscyphaceae sp. Individually, fungal endophytes did not negatively impact growth rates of D. scoparium. Our results support the long-standing hypothesis that some fungal endophytes can switch to saprotrophism.

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Claims 6

Intervention effectobservedoriginal resultmixedmeasured

Claim · model-written summary

Co-culture left moss growth unchanged or increased it.

Taxon
D. scopariumDicranum scopariume0
Treatment
co-culturee0
Outcome
Growth ratese0
Direction
unchanged, or increasede0
Comparator
axenice1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Dicranum scoparium
Dicranum scoparium · TaxonJames K. Lindsey · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Growth rates of D. scoparium were unchanged, or increased, when in co-culture.”

✓ located verbatim in the source · abstract, characters 751–829 · show in text ↑
e1

“between axenic and co-culture treatments”

✓ located verbatim in the source · abstract, characters 567–607 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Growth promotion by Hyaloscyphaceae sp. was associated with differential auxin-related gene expression.

Taxon
Dicranum scopariumDicranum scopariumt0
Interactor
Hyaloscyphaceae sp.Hyaloscyphaceaee0symbiont
Gene
auxin-related genese0
Outcome
differential expression of auxin-related genese0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Dicranum scoparium
Dicranum scoparium · TaxonJames K. Lindsey · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“One fungal isolate (Hyaloscyphaceae sp.) that promoted moss growth was associated with differential expression of auxin-related genes.”

✓ located verbatim in the source · abstract, characters 830–964 · show in text ↑
t0

“Dicranum scoparium”

✓ located verbatim in the source · title, characters 84–102 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Coniochaeta sp. shifted from carbohydrate transport activity on living gametophytes to oxidation-based degradation on dead ones.

Taxon
Dicranum scopariumDicranum scopariumt0
Organ / stage
gametophytese0
Interactor
Coniochaeta sp.Coniochaetae0symbiont
Outcome
carbohydrate transporter activitye0
Direction
switchede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Dicranum scoparium
Dicranum scoparium · TaxonJames K. Lindsey · CC BY-SA 3.0 · Wikimedia Commons ↗
Coniochaeta
Coniochaeta · InteractorSigrid Jakob · CC BY 4.0 · Wikimedia Commons ↗

Verbatim

e0

“When grown with living vs dead gametophytes, Coniochaeta sp. switched from having upregulated carbohydrate transporter activity to upregulated oxidation-based degradation”

✓ located verbatim in the source · abstract, characters 965–1135 · show in text ↑
t0

“Dicranum scoparium”

✓ located verbatim in the source · title, characters 84–102 · show in text ↑
Observationobservedoriginal resultno effectmeasured

Claim · model-written summary

Hyaloscyphaceae sp. showed no such trophic transition.

Taxon
Dicranum scopariumDicranum scopariumt0
Interactor
Hyaloscyphaceae sp.Hyaloscyphaceaee0symbiont
Outcome
no such transitione0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Dicranum scoparium
Dicranum scoparium · TaxonJames K. Lindsey · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“no such transition was detected for Hyaloscyphaceae sp.”

✓ located verbatim in the source · abstract, characters 1201–1256 · show in text ↑
t0

“Dicranum scoparium”

✓ located verbatim in the source · title, characters 84–102 · show in text ↑
Associationobservedoriginal resultno effectmeasured

Claim · model-written summary

Individual endophytes did not harm moss growth.

Taxon
D. scopariumDicranum scopariume0
Interactor
fungal endophytesFungie0symbiont
Outcome
growth ratese0
Direction
did not negatively impacte0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Dicranum scoparium
Dicranum scoparium · TaxonJames K. Lindsey · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Individually, fungal endophytes did not negatively impact growth rates of D. scoparium.”

✓ located verbatim in the source · abstract, characters 1257–1344 · show in text ↑
Observationauthor interpretationoriginal resultmeasured

Claim · model-written summary

Some endophytes can switch to saprotrophism.

Taxon
Dicranum scopariumDicranum scopariumt0
Interactor
fungal endophytesFungie0symbiont
Outcome
switch to saprotrophisme0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Dicranum scoparium
Dicranum scoparium · TaxonJames K. Lindsey · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“some fungal endophytes can switch to saprotrophism”

✓ located verbatim in the source · abstract, characters 1399–1449 · show in text ↑
t0

“Dicranum scoparium”

✓ located verbatim in the source · title, characters 84–102 · show in text ↑