Abstract
To find the gene hypervariable regions of three varieties of Hansenia forbesii H. Boissieu and determine their phylogenetic relationship, the chloroplast (cp) genome of these three varieties were firstly sequencing by the Illumina hiseq platform. In this study, we assembled the complete cp genome sequences of Hansenia forbesii LQ (156,954 bp), H. forbesii QX (157,181 bp), H. forbesii WQ (156,975 bp). They all contained 84 protein-coding genes, 37 tRNAs, and 8 rRNAs. The hypervariable regions between three cp genomes were atpF-atpH, petD, and rps15-ycf1. Phylogenetic analysis showed that H. forbesii LQ and H. forbesii WQ were closely related, followed by H. forbesii QX. This study showed that the three varieties of H. forbesii could be identified by the complete cp genome and specific DNA barcode (trnC-GCA-petN) and provided a new idea for germplasm identification of similar cultivated varieties.
Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗
The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.
Claims 7
Claim · model-written summary
Complete cp genome of Hansenia forbesii LQ is 156,954 bp.
- Taxon
- Hansenia forbesiiHansenia forbesiie1
- Material
- LQe1
- Outcome
- complete cp genome sequencese1
- Value
- 156,954 bpe1
Verbatim
e1“we assembled the complete cp genome sequences of Hansenia forbesii LQ (156,954 bp), H. forbesii QX (157,181 bp), H. forbesii WQ (156,975 bp)”
Claim · model-written summary
Complete cp genome of Hansenia forbesii QX is 157,181 bp.
- Taxon
- Hansenia forbesiiHansenia forbesiie1
- Material
- QXe1
- Outcome
- complete cp genome sequencese1
- Value
- 157,181 bpe1
Verbatim
e1“we assembled the complete cp genome sequences of Hansenia forbesii LQ (156,954 bp), H. forbesii QX (157,181 bp), H. forbesii WQ (156,975 bp)”
Claim · model-written summary
Complete cp genome of Hansenia forbesii WQ is 156,975 bp.
- Taxon
- Hansenia forbesiiHansenia forbesiie1
- Material
- WQe1
- Outcome
- complete cp genome sequencese1
- Value
- 156,975 bpe1
Verbatim
e1“we assembled the complete cp genome sequences of Hansenia forbesii LQ (156,954 bp), H. forbesii QX (157,181 bp), H. forbesii WQ (156,975 bp)”
Claim · model-written summary
The three cp genomes each contain 84 protein-coding genes, 37 tRNAs and 8 rRNAs.
- Taxon
- Hansenia forbesiiHansenia forbesiie1
- Outcome
- protein-coding genese2
- Value
- 84 protein-coding genes, 37 tRNAs, and 8 rRNAse2
Verbatim
e1“we assembled the complete cp genome sequences of Hansenia forbesii LQ (156,954 bp), H. forbesii QX (157,181 bp), H. forbesii WQ (156,975 bp)”
e2“They all contained 84 protein-coding genes, 37 tRNAs, and 8 rRNAs”
Claim · model-written summary
Hypervariable regions between the three cp genomes are atpF-atpH, petD and rps15-ycf1.
- Taxon
- Hansenia forbesiiHansenia forbesiie1
- Gene
- atpF-atpH, petD, and rps15-ycf1e3
- Outcome
- hypervariable regionse3
Verbatim
e1“we assembled the complete cp genome sequences of Hansenia forbesii LQ (156,954 bp), H. forbesii QX (157,181 bp), H. forbesii WQ (156,975 bp)”
e3“The hypervariable regions between three cp genomes were atpF-atpH, petD, and rps15-ycf1”
Claim · model-written summary
H. forbesii LQ and WQ are closely related, followed by QX.
- Taxon
- H. forbesiiHansenia forbesiie4
- Material
- H. forbesii LQe4
- Outcome
- closely relatede4
- Qualifier
- followed by H. forbesii QXe4
Verbatim
e4“Phylogenetic analysis showed that H. forbesii LQ and H. forbesii WQ were closely related, followed by H. forbesii QX”
Claim · model-written summary
The three varieties could be identified by the complete cp genome and the DNA barcode trnC-GCA-petN.
- Taxon
- H. forbesiiHansenia forbesiie5
- Gene
- trnC-GCA-petNe5
- Outcome
- could be identifiede5
- Comparator
- complete cp genomee5
Verbatim
e5“the three varieties of H. forbesii could be identified by the complete cp genome and specific DNA barcode (trnC-GCA-petN)”