Paper · 2023 · BAREKENG JURNAL ILMU MATEMATIKA DAN TERAPAN

THE APPLICATION OF DISCRETE HIDDEN MARKOV MODEL ON CROSSES OF DIPLOID PLANT

Nahrul Hayati; Berlian Setiawaty; I Gusti Putu Purnaba

7
claims
14
verbatim quotes
0
citations
1
research areas
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Open access · cc-by-sa

Abstract

The hidden Markov model consists of a pair of an unobserved Markov chain {Xk} and an observation process {Yk}. In this research, the crosses of diploid plant apply the model. The Markov chain {Xk} represents genetic structure, which is genotype of the kth generation of an organism. The observation process represents the appearance or the observed trait, which is the phenotype of the generation of an organism. Since it is unlikely to observe the genetic structure directly, the Hidden Markov model can be used to model pairs of events and unobservable their causes. Forming the model requires the use of the theory of heredity from Mendel. This model can be used to explain the characteristic of true breeding on crosses of diploid plants. The more traits crossed, the smaller probability of plants having a dominant phenotype in that period. Monohybrid, dihybrid, and trihybrid crosses have a dominant phenotype probability of 99% in the seventh, eighth, and ninth generations, with the condition of previous generations having a dominant phenotype. But in seventh generation, monohybrid crosses only have the probability of an optimal genotype of 50%, dihybrid crosses have a probability of an optimal genotype of 25% in the eighth generation, and trihybrid crosses have a probability of an optimal genotype of 12.5% in the ninth generation

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Claims 7

Observationobservedoriginal resultsimulated

Claim · model-written summary

Monohybrid crosses have a dominant phenotype probability of 99% in the seventh generation, given dominant previous generations.

Taxon
diploid plante0
Treatment
Monohybride1
Outcome
dominant phenotype probabilitye1
Value
99%e1
Qualifier
with the condition of previous generations having a dominant phenotypee1

Verbatim

e0

“In this research, the crosses of diploid plant apply the model”

✓ located verbatim in the source · abstract, characters 111–173 · show in text ↑
e1

“Monohybrid, dihybrid, and trihybrid crosses have a dominant phenotype probability of 99% in the seventh, eighth, and ninth generations, with the condition of previous generations having a dominant phenotype”

✓ located verbatim in the source · abstract, characters 846–1052 · show in text ↑
Observationobservedoriginal resultsimulated

Claim · model-written summary

Dihybrid crosses have a dominant phenotype probability of 99% in the eighth generation, given dominant previous generations.

Taxon
diploid plante0
Treatment
dihybride1
Outcome
dominant phenotype probabilitye1
Value
99%e1
Qualifier
with the condition of previous generations having a dominant phenotypee1

Verbatim

e0

“In this research, the crosses of diploid plant apply the model”

✓ located verbatim in the source · abstract, characters 111–173 · show in text ↑
e1

“Monohybrid, dihybrid, and trihybrid crosses have a dominant phenotype probability of 99% in the seventh, eighth, and ninth generations, with the condition of previous generations having a dominant phenotype”

✓ located verbatim in the source · abstract, characters 846–1052 · show in text ↑
Observationobservedoriginal resultsimulated

Claim · model-written summary

Trihybrid crosses have a dominant phenotype probability of 99% in the ninth generation, given dominant previous generations.

Taxon
diploid plante0
Treatment
trihybrid crossese1
Outcome
dominant phenotype probabilitye1
Value
99%e1
Qualifier
with the condition of previous generations having a dominant phenotypee1

Verbatim

e0

“In this research, the crosses of diploid plant apply the model”

✓ located verbatim in the source · abstract, characters 111–173 · show in text ↑
e1

“Monohybrid, dihybrid, and trihybrid crosses have a dominant phenotype probability of 99% in the seventh, eighth, and ninth generations, with the condition of previous generations having a dominant phenotype”

✓ located verbatim in the source · abstract, characters 846–1052 · show in text ↑
Observationobservedoriginal resultsimulated

Claim · model-written summary

Monohybrid crosses have a probability of an optimal genotype of 50% in the seventh generation.

Taxon
diploid plante0
Treatment
monohybrid crossese2
Outcome
probability of an optimal genotypee2
Value
50%e2
Qualifier
in seventh generatione2

Verbatim

e0

“In this research, the crosses of diploid plant apply the model”

✓ located verbatim in the source · abstract, characters 111–173 · show in text ↑
e2

“in seventh generation, monohybrid crosses only have the probability of an optimal genotype of 50%”

✓ located verbatim in the source · abstract, characters 1058–1155 · show in text ↑
Observationobservedoriginal resultsimulated

Claim · model-written summary

Dihybrid crosses have a probability of an optimal genotype of 25% in the eighth generation.

Taxon
diploid plante0
Treatment
dihybrid crossese3
Outcome
probability of an optimal genotypee3
Value
25%e3

Verbatim

e0

“In this research, the crosses of diploid plant apply the model”

✓ located verbatim in the source · abstract, characters 111–173 · show in text ↑
e3

“dihybrid crosses have a probability of an optimal genotype of 25% in the eighth generation”

✓ located verbatim in the source · abstract, characters 1157–1247 · show in text ↑
Observationobservedoriginal resultsimulated

Claim · model-written summary

Trihybrid crosses have a probability of an optimal genotype of 12.5% in the ninth generation.

Taxon
diploid plante0
Treatment
trihybrid crossese4
Outcome
probability of an optimal genotypee4
Value
12.5%e4

Verbatim

e0

“In this research, the crosses of diploid plant apply the model”

✓ located verbatim in the source · abstract, characters 111–173 · show in text ↑
e4

“trihybrid crosses have a probability of an optimal genotype of 12.5% in the ninth generation”

✓ located verbatim in the source · abstract, characters 1253–1345 · show in text ↑
Associationobservedoriginal resultsimulated

Claim · model-written summary

The more traits crossed, the smaller the probability that plants have a dominant phenotype in that period.

Taxon
diploid plante0
Treatment
more traits crossede5
Outcome
probability of plants having a dominant phenotypee5
Direction
smallere5

Verbatim

e0

“In this research, the crosses of diploid plant apply the model”

✓ located verbatim in the source · abstract, characters 111–173 · show in text ↑
e5

“The more traits crossed, the smaller probability of plants having a dominant phenotype in that period”

✓ located verbatim in the source · abstract, characters 743–844 · show in text ↑