Paper · 2025 · Plants

Characterizing Wheat Rhizosphere Bacterial Microbiome Dynamics Under Salinity Stress: Insights from 16S rRNA Metagenomics for Enhancing Stress Tolerance

Nourhan Fouad; Emad M. El-Zayat; Dina Amr; et al.

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verbatim quotes
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citations
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Open access · cc-by

Abstract

Salinity is one of the most important abiotic stress factors affecting wheat production. Salt in the soil is a major environmental stressor that can affect the bacterial community in the rhizosphere of wheat. The bacteria in the plant’s rhizosphere promote growth and stress tolerance, which vary by variety and location. Nevertheless, the soil harbors some of the most diverse microbial communities, while the rhizosphere selectively recruits according to the needs of plants in a complex harmonic regulation. The microbial composition and diversity under normal and saline conditions were assessed by comparing the rhizosphere of wheat with soil using 16S rRNA gene amplicon sequencing, highlighting the number of operational taxonomic units (OTUs). Taxonomic analyzes showed that the bacterial community was predominantly and characteristically composed of the phyla Proteobacteria, Actinobacteria, Bacteroidetes, Firmicutes, Verrucomicrobia, and Fibrobacteres, representing the usual microbial profile for the rhizosphere of wheat. Idiomarinaceae, Rheinheimera, Halomonas, and Pseudomonas (a strain of Proteobacteria), together with Gracilibacillus (a strain of Firmicutes Bacilli), were recognized as microbial signatures for the rhizosphere microbiome under saline conditions. This was observed even with unchanged soil type and genotype. These patterns occurred despite the same soil type and genotype, with salinity being the only variable. The collective action of these bacterial phyla in the rhizosphere not only improves nutrient availability but also induces systemic resistance in the plants. This synergistic effect improves plant resistance to salt stress and supports the development of salt-tolerant wheat varieties. These microbial signatures could improve our understanding of plant–microbe interactions and support the development of microbiome-based solutions for salt stress.

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The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 10

Observationobservedoriginal resultmeasured

Claim · model-written summary

The wheat rhizosphere bacterial community was predominantly composed of six listed phyla.

Interactor
ProteobacteriaPseudomonadotae0other
Outcome
bacterial communitye0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“the bacterial community was predominantly and characteristically composed of the phyla Proteobacteria, Actinobacteria, Bacteroidetes, Firmicutes, Verrucomicrobia, and Fibrobacteres”

✓ located verbatim in the source · abstract, characters 783–963 · show in text ↑
t0

“Wheat”

✓ located verbatim in the source · title, characters 15–20 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Idiomarinaceae was identified as a signature of the wheat rhizosphere under salinity.

Treatment
saline conditionse0
Interactor
IdiomarinaceaeIdiomarinaceaee0other
Outcome
microbial signaturese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Idiomarinaceae, Rheinheimera, Halomonas, and Pseudomonas (a strain of Proteobacteria), together with Gracilibacillus (a strain of Firmicutes Bacilli), were recognized as microbial signatures for the rhizosphere microbiome under saline conditions”

✓ located verbatim in the source · abstract, characters 1036–1281 · show in text ↑
t0

“Wheat”

✓ located verbatim in the source · title, characters 15–20 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Rheinheimera was identified as a signature of the wheat rhizosphere under salinity.

Interactor
RheinheimeraRheinheimerae0other
Outcome
microbial signaturese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Idiomarinaceae, Rheinheimera, Halomonas, and Pseudomonas (a strain of Proteobacteria), together with Gracilibacillus (a strain of Firmicutes Bacilli), were recognized as microbial signatures for the rhizosphere microbiome under saline conditions”

✓ located verbatim in the source · abstract, characters 1036–1281 · show in text ↑
t0

“Wheat”

✓ located verbatim in the source · title, characters 15–20 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Halomonas was identified as a signature of the wheat rhizosphere under salinity.

Interactor
HalomonasHalomonase0other
Outcome
microbial signaturese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗
Halomonas
Halomonas · Interactor · picture of the genus (one of its species)NASA/Jodi Switzer Blum · Public domain · Wikimedia Commons ↗

Verbatim

e0

“Idiomarinaceae, Rheinheimera, Halomonas, and Pseudomonas (a strain of Proteobacteria), together with Gracilibacillus (a strain of Firmicutes Bacilli), were recognized as microbial signatures for the rhizosphere microbiome under saline conditions”

✓ located verbatim in the source · abstract, characters 1036–1281 · show in text ↑
t0

“Wheat”

✓ located verbatim in the source · title, characters 15–20 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Pseudomonas was identified as a signature of the wheat rhizosphere under salinity.

Interactor
PseudomonasPseudomonase0other
Outcome
microbial signaturese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗
Pseudomonas
Pseudomonas · Interactor · picture of the genus (one of its species)CDC · Public domain · Wikimedia Commons ↗

Verbatim

e0

“Idiomarinaceae, Rheinheimera, Halomonas, and Pseudomonas (a strain of Proteobacteria), together with Gracilibacillus (a strain of Firmicutes Bacilli), were recognized as microbial signatures for the rhizosphere microbiome under saline conditions”

✓ located verbatim in the source · abstract, characters 1036–1281 · show in text ↑
t0

“Wheat”

✓ located verbatim in the source · title, characters 15–20 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Gracilibacillus was identified as a signature of the wheat rhizosphere under salinity.

Interactor
GracilibacillusGracilibacilluse0other
Outcome
microbial signaturese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Idiomarinaceae, Rheinheimera, Halomonas, and Pseudomonas (a strain of Proteobacteria), together with Gracilibacillus (a strain of Firmicutes Bacilli), were recognized as microbial signatures for the rhizosphere microbiome under saline conditions”

✓ located verbatim in the source · abstract, characters 1036–1281 · show in text ↑
t0

“Wheat”

✓ located verbatim in the source · title, characters 15–20 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The reported microbial signatures persisted with soil type and genotype unchanged.

Outcome
This was observede0
Qualifier
unchanged soil type and genotypee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“This was observed even with unchanged soil type and genotype”

✓ located verbatim in the source · abstract, characters 1283–1343 · show in text ↑
t0

“Wheat”

✓ located verbatim in the source · title, characters 15–20 · show in text ↑
Mechanismauthor interpretationoriginal resultpositivemeasured

Claim · model-written summary

The authors interpret rhizosphere bacteria as improving nutrient availability.

Interactor
bacterial phylae0other
Outcome
nutrient availabilitye0
Direction
improvese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“The collective action of these bacterial phyla in the rhizosphere not only improves nutrient availability but also induces systemic resistance in the plants”

✓ located verbatim in the source · abstract, characters 1449–1605 · show in text ↑
t0

“Wheat”

✓ located verbatim in the source · title, characters 15–20 · show in text ↑
Mechanismauthor interpretationoriginal resultpositivemeasured

Claim · model-written summary

The authors interpret rhizosphere bacteria as inducing systemic resistance in wheat.

Interactor
bacterial phylae0other
Outcome
systemic resistancee0
Direction
inducese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“The collective action of these bacterial phyla in the rhizosphere not only improves nutrient availability but also induces systemic resistance in the plants”

✓ located verbatim in the source · abstract, characters 1449–1605 · show in text ↑
t0

“Wheat”

✓ located verbatim in the source · title, characters 15–20 · show in text ↑
Mechanismauthor interpretationoriginal resultpositivemeasured

Claim · model-written summary

The authors interpret the microbial synergy as improving plant salt resistance.

Outcome
plant resistance to salt stresse0
Direction
improvese0
Qualifier
synergistic effecte0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“This synergistic effect improves plant resistance to salt stress and supports the development of salt-tolerant wheat varieties”

✓ located verbatim in the source · abstract, characters 1607–1733 · show in text ↑
t0

“Wheat”

✓ located verbatim in the source · title, characters 15–20 · show in text ↑