Paper · 2025 · Soil Science & Plant Nutrition

Effects of the interactions between a cover crop and a microbial inoculant on rice growth and yield in an organic paddy field

Takatoki Kaku; Naoya Takashima; Koki Mutoh; et al.

12
claims
25
verbatim quotes
0
citations
2
research areas
—
Not open access

Abstract

The experiments were conducted in an organically cultivated rice field in 2021 and 2022 to investigate the effects of applying Italian ryegrass as a cover crop in combination with the microbial inoculant ‘Inefaita’ (IF), which contains an endophytic bacterium belonging to genus Azospirillum as plant growth-promoting bacteria. The rice field was subjected to four treatments: cover crop incorporated treatment without IF inoculation (CC), cover crop incorporated treatment with IF inoculation (CC/IF), fallow treatment without IF inoculation (FA), and fallow treatment with IF inoculation (FA/IF). To characterize the structure of microbial communities in rice root-associated soil under the CC and FA treatments (excluding CC/IF and FA/IF), meta amplicon – sequencing based on the prokaryotic 16S rRNA gene was performed. The relative abundance of the dominant phyla in the bacteria was: Proteobacteria (CC 36.6%, FA 33.6%) and Acidobacteria (CC 19.5%, FA 19.7%). This content of Proteobacteria was significantly higher in the CC than in the FA group. There was no significant difference in the relative abundance of the dominant archaeal phyla Nanoarchaeota (CC 50.8%, FA 54.1%) and Crenarchaeota (CC 38.0%, FA 33.3%) between CC and FA. These results indicate that prokaryotic communities in the rice field may be affected by CC management. Additionally, the ANOVA revealed no significant positive effects of CC on rice yield, while IF inoculation had a significant positive effect on yield. Furthermore, there were significant interactions between CC and IF on spikelet number and yield. The CC/IF yield was 4.1% higher than that of the CC in 2021 and 5.9% lower in 2022, whereas that of the FA/IF was 42.5% higher than that of FA in 2021 and 12.1% higher in 2022. Therefore, a positive effect of IF inoculation on yield was observed in FA. Although CC application affected the structure of soil microbial communities, its combination with IF inoculation did not increase rice yield.

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Claims 12

Intervention effectobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Cover crop management gave a significantly higher Proteobacteria content in rice root-associated soil than fallow.

Organ / stage
rice root-associated soile0
Treatment
CCe1
Outcome
content of Proteobacteriae1
Direction
highere1
Comparator
FA groupe1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“To characterize the structure of microbial communities in rice root-associated soil under the CC and FA treatments”

✓ located verbatim in the source · abstract, characters 599–713 · show in text ↑
e1

“This content of Proteobacteria was significantly higher in the CC than in the FA group”

✓ located verbatim in the source · abstract, characters 966–1052 · show in text ↑
Intervention effectobservedoriginal resultno effectnot significant (as stated)measured

Claim · model-written summary

Cover crop management did not change the relative abundance of Nanoarchaeota in rice root-associated soil compared with fallow.

Treatment
CCe2
Outcome
Nanoarchaeotae2
Direction
no significant differencee2
Value
CC 50.8%, FA 54.1%e2
Comparator
FAe2

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“To characterize the structure of microbial communities in rice root-associated soil under the CC and FA treatments”

✓ located verbatim in the source · abstract, characters 599–713 · show in text ↑
e2

“There was no significant difference in the relative abundance of the dominant archaeal phyla Nanoarchaeota (CC 50.8%, FA 54.1%) and Crenarchaeota (CC 38.0%, FA 33.3%) between CC and FA”

✓ located verbatim in the source · abstract, characters 1054–1238 · show in text ↑
Intervention effectobservedoriginal resultno effectnot significant (as stated)measured

Claim · model-written summary

Cover crop management did not change the relative abundance of Crenarchaeota in rice root-associated soil compared with fallow.

Treatment
CCe2
Outcome
Crenarchaeotae2
Direction
no significant differencee2
Value
CC 38.0%, FA 33.3%e2
Comparator
FAe2

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“To characterize the structure of microbial communities in rice root-associated soil under the CC and FA treatments”

✓ located verbatim in the source · abstract, characters 599–713 · show in text ↑
e2

“There was no significant difference in the relative abundance of the dominant archaeal phyla Nanoarchaeota (CC 50.8%, FA 54.1%) and Crenarchaeota (CC 38.0%, FA 33.3%) between CC and FA”

✓ located verbatim in the source · abstract, characters 1054–1238 · show in text ↑
Intervention effectobservedoriginal resultno effectnot significant (as stated)measured

Claim · model-written summary

Cover crop management had no significant positive effect on rice yield.

Treatment
CCe3
Outcome
rice yielde3
Direction
no significant positive effectse3

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“To characterize the structure of microbial communities in rice root-associated soil under the CC and FA treatments”

✓ located verbatim in the source · abstract, characters 599–713 · show in text ↑
e3

“the ANOVA revealed no significant positive effects of CC on rice yield, while IF inoculation had a significant positive effect on yield”

✓ located verbatim in the source · abstract, characters 1358–1493 · show in text ↑
Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

Inoculation with the Azospirillum-based inoculant had a significant positive effect on rice yield.

Treatment
IF inoculatione3
Interactor
AzospirillumAzospirillume4symbiont
Outcome
yielde3
Direction
significant positive effecte3

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗
Azospirillum
Azospirillum · InteractorFadelblaid · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“To characterize the structure of microbial communities in rice root-associated soil under the CC and FA treatments”

✓ located verbatim in the source · abstract, characters 599–713 · show in text ↑
e3

“the ANOVA revealed no significant positive effects of CC on rice yield, while IF inoculation had a significant positive effect on yield”

✓ located verbatim in the source · abstract, characters 1358–1493 · show in text ↑
e4

“which contains an endophytic bacterium belonging to genus Azospirillum as plant growth-promoting bacteria”

✓ located verbatim in the source · abstract, characters 221–326 · show in text ↑
Associationobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Cover crop and inoculant interacted significantly on spikelet number and yield of rice.

Treatment
CC and IFe5
Outcome
spikelet number and yielde5

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“To characterize the structure of microbial communities in rice root-associated soil under the CC and FA treatments”

✓ located verbatim in the source · abstract, characters 599–713 · show in text ↑
e5

“there were significant interactions between CC and IF on spikelet number and yield”

✓ located verbatim in the source · abstract, characters 1508–1590 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Cover crop with inoculant yielded 4.1% more rice than cover crop alone in 2021.

Treatment
CC/IFe6
Outcome
yielde6
Direction
highere6
Value
4.1%e6
Comparator
the CCe6
Setting
2021e6

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“To characterize the structure of microbial communities in rice root-associated soil under the CC and FA treatments”

✓ located verbatim in the source · abstract, characters 599–713 · show in text ↑
e6

“The CC/IF yield was 4.1% higher than that of the CC in 2021 and 5.9% lower in 2022, whereas that of the FA/IF was 42.5% higher than that of FA in 2021 and 12.1% higher in 2022”

✓ located verbatim in the source · abstract, characters 1592–1767 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Cover crop with inoculant yielded 5.9% less rice than cover crop alone in 2022.

Treatment
CC/IFe6
Outcome
yielde6
Direction
lowere6
Value
5.9%e6
Comparator
the CCe6
Setting
2022e6

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“To characterize the structure of microbial communities in rice root-associated soil under the CC and FA treatments”

✓ located verbatim in the source · abstract, characters 599–713 · show in text ↑
e6

“The CC/IF yield was 4.1% higher than that of the CC in 2021 and 5.9% lower in 2022, whereas that of the FA/IF was 42.5% higher than that of FA in 2021 and 12.1% higher in 2022”

✓ located verbatim in the source · abstract, characters 1592–1767 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Fallow with inoculant yielded 42.5% more rice than fallow alone in 2021.

Treatment
FA/IFe6
Outcome
yielde6
Direction
highere6
Value
42.5%e6
Comparator
FAe6
Setting
2021e6

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“To characterize the structure of microbial communities in rice root-associated soil under the CC and FA treatments”

✓ located verbatim in the source · abstract, characters 599–713 · show in text ↑
e6

“The CC/IF yield was 4.1% higher than that of the CC in 2021 and 5.9% lower in 2022, whereas that of the FA/IF was 42.5% higher than that of FA in 2021 and 12.1% higher in 2022”

✓ located verbatim in the source · abstract, characters 1592–1767 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Fallow with inoculant yielded 12.1% more rice than fallow alone in 2022.

Treatment
FA/IFe6
Outcome
yielde6
Direction
highere6
Value
12.1%e6
Comparator
FAe6
Setting
2022e6

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“To characterize the structure of microbial communities in rice root-associated soil under the CC and FA treatments”

✓ located verbatim in the source · abstract, characters 599–713 · show in text ↑
e6

“The CC/IF yield was 4.1% higher than that of the CC in 2021 and 5.9% lower in 2022, whereas that of the FA/IF was 42.5% higher than that of FA in 2021 and 12.1% higher in 2022”

✓ located verbatim in the source · abstract, characters 1592–1767 · show in text ↑
Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

Combining cover crop with inoculant did not increase rice yield.

Treatment
combination with IF inoculatione7
Outcome
rice yielde7
Direction
did not increasee7

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“To characterize the structure of microbial communities in rice root-associated soil under the CC and FA treatments”

✓ located verbatim in the source · abstract, characters 599–713 · show in text ↑
e7

“Although CC application affected the structure of soil microbial communities, its combination with IF inoculation did not increase rice yield”

✓ located verbatim in the source · abstract, characters 1845–1986 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Cover crop application affected the structure of soil microbial communities in rice fields.

Treatment
CC applicatione7
Outcome
structure of soil microbial communitiese7

Not reportedComparatorDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“To characterize the structure of microbial communities in rice root-associated soil under the CC and FA treatments”

✓ located verbatim in the source · abstract, characters 599–713 · show in text ↑
e7

“Although CC application affected the structure of soil microbial communities, its combination with IF inoculation did not increase rice yield”

✓ located verbatim in the source · abstract, characters 1845–1986 · show in text ↑

inoculation · yield · Oryza sativa (rice)Positive and negative results

418 papers: 382 positive, 36 negative or no effect

35 papers in the same direction as this paper · 382 in the opposite direction

  1. positive
  2. positive
  3. positive

414 papers more in this group

See all 418 papers →

inoculation · Azospirillum · Oryza sativa (rice)Results agree

3 papers: 3 positive, 0 negative or no effect

2 papers in the same direction as this paper

  1. positive
  2. positive
See all 3 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.