Abstract
). Integrating comparative genomics, pangenomics, population genetics, and quantitative genetics, we identified 6,713 gene gains and 2,802 losses during domestication, affecting flowering time and developmental processes. Population genetics of 333 wild and cultivated accessions revealed 25.76% and 40.40% reductions in structural and deleterious variant burdens in cultivars, potentially reflecting a dramatic loss of genetic diversity of the wild progenitor. Quantitative genetics detected genetic association of yield traits, and essential roles of deleterious and structural variants in the formation of yield traits. In general, this study highlights significant impacts of structural and deleterious variants on yield traits and provides valuable guidelines for molecular breeding of foxtail millet.
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Claims 6
Claim · model-written summary
Domestication involved 6,713 gene gains.
- Taxon
- foxtail millet
Setaria italicat0 - Outcome
- gene gainse0
- Value
- 6,713e0
- Qualifier
- during domesticatione0
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e0“we identified 6,713 gene gains and 2,802 losses during domestication, affecting flowering time and developmental processes”
t0“foxtail millet”
Claim · model-written summary
Domestication involved 2,802 gene losses.
- Taxon
- foxtail milletSetaria italicat0
- Outcome
- lossese0
- Value
- 2,802e0
- Qualifier
- during domesticatione0
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e0“we identified 6,713 gene gains and 2,802 losses during domestication, affecting flowering time and developmental processes”
t0“foxtail millet”
Claim · model-written summary
The gene changes affected flowering time and developmental processes.
- Taxon
- foxtail milletSetaria italicat0
- Gene
- gene gainse0
- Outcome
- flowering time and developmental processese0
- Qualifier
- during domesticatione0
Not reportedDirection
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e0“gene gains and 2,802 losses during domestication, affecting flowering time and developmental processes”
t0“foxtail millet”
Claim · model-written summary
Structural variant burden in cultivars was reduced by 25.76%.
- Taxon
- foxtail milletSetaria italicat0
- Material
- cultivarse0
- Outcome
- structural and deleterious variant burdense0
- Direction
- reductionse0
- Value
- 25.76%e0
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e0“25.76% and 40.40% reductions in structural and deleterious variant burdens in cultivars”
t0“foxtail millet”
Claim · model-written summary
Deleterious variant burden in cultivars was reduced by 40.40%.
- Taxon
- foxtail milletSetaria italicat0
- Material
- cultivarse0
- Outcome
- structural and deleterious variant burdense0
- Direction
- reductionse0
- Value
- 40.40%e0
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e0“25.76% and 40.40% reductions in structural and deleterious variant burdens in cultivars”
t0“foxtail millet”
Claim · model-written summary
Quantitative genetics detected genetic associations with yield traits.
- Taxon
- foxtail milletSetaria italicat0
- Gene
- deleterious and structural variantse0
- Outcome
- yield traitse0
Not reportedMaterialDirection
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e0“Quantitative genetics detected genetic association of yield traits, and essential roles of deleterious and structural variants in the formation of yield traits”
t0“foxtail millet”