Paper · 2026 · Plants People Planet

Speciation with gene flow

Zhiqin Long; Xu Zhang; Yue Yu; et al.

6
claims
7
verbatim quotes
2
citations
1
research areas
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Open access

Abstract

Societal Impact Statement Biodiversity is threatened by human activities, with extinction debt accumulating rapidly. Many of these activities change the connectivity of populations, fragmenting existing population systems or bringing previously isolated populations or species into contact. Speciation research offers insights into both the short‐ and long‐term outcomes of changes in isolation and connectivity and thus provides fundamental knowledge that can inform biodiversity management. Here, we review what is known about the role of gene flow in speciation, highlighting that gene flow does not appear to be a major impediment to speciation in plants and instead often contributes to diversification. Summary The likelihood of speciation with gene flow represents one of the longest running debates in evolutionary biology. Gene flow can hamper speciation by disrupting associations between loci under divergent natural selection and those causing assortative mating. Conversely, variation introduced by gene flow can facilitate speciation, and some modes of speciation require interspecific gene flow. Here, we first describe the history of this debate. Next, we review theoretical models of speciation with gene flow, along with empirical evidence, emphasizing studies of plants. Our review includes both primary divergence with gene flow, as well as gene flow following secondary contact, including different forms of hybrid speciation. We find that plants have several characteristics that can promote the formation of associations between ecological and assortative mating traits, including magic traits (divergently selected traits that also cause assortative mating) and abundant recombination suppressors, such as inversions. Biogeographic studies of several plant groups show patterns of greater range overlap and range asymmetry in sister species compared with more distantly related species. This pattern suggests that geographic isolation is not required for speciation in plants and also that speciation by budding may be important. Genomic data further indicate that gene flow is frequent, but often intermittent, during the speciation process in plants and that speciation triggered by secondary gene flow (introgression) is common. We conclude that Darwin's skepticism about the necessity of geographic isolation in speciation is warranted, especially in the plant kingdom.

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Claims 6

Observationauthor interpretationreview summarypositivebasis n/a

Claim · model-written summary

Gene flow often contributes to plant diversification and does not appear a major impediment to speciation.

Taxon
plantsViridiplantaee0
Outcome
speciation in plantse0

Not reportedDirection

Verbatim

e0

“gene flow does not appear to be a major impediment to speciation in plants and instead often contributes to diversification”

✓ located verbatim in the source · abstract, characters 584–707 · show in text ↑
Mechanismauthor interpretationreview summarypositivebasis n/a

Claim · model-written summary

Plants have traits that can promote associations between ecological and assortative mating traits.

Taxon
plantsViridiplantaee0
Outcome
formation of associations between ecological and assortative mating traitse0
Qualifier
magic traitse0

Not reportedDirection

Verbatim

e0

“plants have several characteristics that can promote the formation of associations between ecological and assortative mating traits, including magic traits (divergently selected traits that also cause assortative mating) and abundant recombination suppressors, such as inversions”

✓ located verbatim in the source · abstract, characters 1461–1740 · show in text ↑
Observationobservedreview summarymeasured

Claim · model-written summary

Sister plant species show greater range overlap and asymmetry than more distant species.

Taxon
plant groupse0
Outcome
range overlap and range asymmetrye0
Direction
greatere0
Comparator
more distantly related speciese0

Verbatim

e0

“Biogeographic studies of several plant groups show patterns of greater range overlap and range asymmetry in sister species compared with more distantly related species.”

✓ located verbatim in the source · abstract, characters 1742–1910 · show in text ↑
Mechanismauthor interpretationreview summarybasis n/a

Claim · model-written summary

The range patterns suggest geographic isolation is not required for plant speciation and budding speciation may matter.

Taxon
plantsViridiplantaee0
Outcome
speciation in plantse0
Qualifier
geographic isolation is not requirede0

Not reportedDirection

Verbatim

e0

“This pattern suggests that geographic isolation is not required for speciation in plants and also that speciation by budding may be important.”

✓ located verbatim in the source · abstract, characters 1911–2053 · show in text ↑
Observationobservedreview summarymeasured

Claim · model-written summary

Genomic data indicate frequent but intermittent gene flow during plant speciation.

Taxon
plantsViridiplantaee0
Outcome
gene flowe0
Qualifier
frequent, but often intermittente0

Not reportedDirection

Verbatim

e0

“Genomic data further indicate that gene flow is frequent, but often intermittent, during the speciation process in plants”

✓ located verbatim in the source · abstract, characters 2054–2175 · show in text ↑
Observationobservedreview summarymeasured

Claim · model-written summary

Speciation triggered by secondary gene flow is common in plants.

Taxon
plantsViridiplantaet0
Outcome
speciation triggered by secondary gene flow (introgression)e0

Not reportedDirection

Verbatim

e0

“speciation triggered by secondary gene flow (introgression) is common”

✓ located verbatim in the source · abstract, characters 2185–2254 · show in text ↑
t0

“speciation process in plants”

✓ located verbatim in the source · abstract, characters 2147–2175 · show in text ↑