Paper · 2026 · Biotech Studies

Effect of phage XooG01 and flagella protein of Xanthomonas oryzae pv. oryzae on Xa genes expression in rice

Hardian Susilo Addy; Wulan Arum Hardiyani; Harits Ramadhan Fajrianto

4
claims
17
verbatim quotes
0
citations
2
research areas
✓
Open access

Abstract

Bacterial leaf blight (BLB) is caused by the phytopathogen Xanthomonas oryzae pv. oryzae (Xoo), a destructive disease that significantly threatens rice production. Controlling bacterial leaf blight on rice (Oryzae sativa) is important through the plant resistance approach, including pathogen-derived ligands such as flagella to induce plant resistance mechanisms, in addition to using lytic bacteriophage. This study investigated the interaction between the bacteriophage XooG01 and flagellar proteins from Xoo H02 on the expression of resistance genes in rice. Leaves were pre-treated with a mixture of the phage and bacterial cell surface appendages before pathogen inoculation, and gene expression was measured using semi-quantitative RT-PCR. The results revealed a paradoxical transcriptional response. While the expression of genes Xa10 and xa13 was significantly upregulated in treated leaves after pathogen challenge, the expression of the primary immune receptor Xa21 was, contrary to expectations, significantly decreased. The expression of Xa4 showed a slight, non-significant increase. This unexpected suppression of Xa21 suggests a phage-mediated interference in the host-pathogen recognition process, likely by the phage physically masking the flagellin elicitor from plant receptors. These findings reveal a complex tripartite interaction with critical implications for the design of future biocontrol strategies.

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Claims 4

Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

Expression of Xa10 and xa13 was significantly upregulated in rice leaves pre-treated with phage and flagellar proteins after pathogen challenge

Treatment
a mixture of the phage and bacterial cell surface appendagese2
Interactor
Xanthomonas oryzae pv. oryzaeXanthomonas oryzae pv. oryzaee0pathogen
Second interactor
bacteriophage XooG01e1biocontrol_agent
Gene
Xa10 and xa13e3
Outcome
expressione3
Direction
upregulatede3

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗
Xanthomonas oryzae pv. oryzae
Xanthomonas oryzae pv. oryzae · InteractorDonald Groth, Louisiana State University AgCenter, Bugwood.org · CC BY 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“Xa genes expression in rice”

✓ located verbatim in the source · title, characters 80–107 · show in text ↑
e0

“Bacterial leaf blight (BLB) is caused by the phytopathogen Xanthomonas oryzae pv. oryzae (Xoo)”

✓ located verbatim in the source · abstract, characters 0–94 · show in text ↑
e1

“This study investigated the interaction between the bacteriophage XooG01 and flagellar proteins from Xoo H02 on the expression of resistance genes in rice”

✓ located verbatim in the source · abstract, characters 407–561 · show in text ↑
e2

“Leaves were pre-treated with a mixture of the phage and bacterial cell surface appendages before pathogen inoculation”

✓ located verbatim in the source · abstract, characters 563–680 · show in text ↑
e3

“While the expression of genes Xa10 and xa13 was significantly upregulated in treated leaves after pathogen challenge”

✓ located verbatim in the source · abstract, characters 808–924 · show in text ↑
Intervention effectobservedoriginal resultnegativesignificant (as stated)measured

Claim · model-written summary

Expression of Xa21 was significantly decreased in rice leaves pre-treated with phage and flagellar proteins, contrary to expectations

Treatment
a mixture of the phage and bacterial cell surface appendagese2
Interactor
Xanthomonas oryzae pv. oryzaeXanthomonas oryzae pv. oryzaee0pathogen
Second interactor
bacteriophage XooG01e1biocontrol_agent
Gene
Xa21e4
Outcome
expressione4
Direction
decreasede4

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗
Xanthomonas oryzae pv. oryzae
Xanthomonas oryzae pv. oryzae · InteractorDonald Groth, Louisiana State University AgCenter, Bugwood.org · CC BY 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“Xa genes expression in rice”

✓ located verbatim in the source · title, characters 80–107 · show in text ↑
e0

“Bacterial leaf blight (BLB) is caused by the phytopathogen Xanthomonas oryzae pv. oryzae (Xoo)”

✓ located verbatim in the source · abstract, characters 0–94 · show in text ↑
e1

“This study investigated the interaction between the bacteriophage XooG01 and flagellar proteins from Xoo H02 on the expression of resistance genes in rice”

✓ located verbatim in the source · abstract, characters 407–561 · show in text ↑
e2

“Leaves were pre-treated with a mixture of the phage and bacterial cell surface appendages before pathogen inoculation”

✓ located verbatim in the source · abstract, characters 563–680 · show in text ↑
e4

“the expression of the primary immune receptor Xa21 was, contrary to expectations, significantly decreased”

✓ located verbatim in the source · abstract, characters 926–1031 · show in text ↑
Intervention effectobservedoriginal resultno effectnot significant (as stated)measured

Claim · model-written summary

Expression of Xa4 showed a slight, non-significant increase in rice leaves pre-treated with phage and flagellar proteins

Treatment
a mixture of the phage and bacterial cell surface appendagese2
Interactor
Xanthomonas oryzae pv. oryzaeXanthomonas oryzae pv. oryzaee0pathogen
Second interactor
bacteriophage XooG01e1biocontrol_agent
Gene
Xa4e5
Outcome
expressione5
Direction
increasee5

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗
Xanthomonas oryzae pv. oryzae
Xanthomonas oryzae pv. oryzae · InteractorDonald Groth, Louisiana State University AgCenter, Bugwood.org · CC BY 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“Xa genes expression in rice”

✓ located verbatim in the source · title, characters 80–107 · show in text ↑
e0

“Bacterial leaf blight (BLB) is caused by the phytopathogen Xanthomonas oryzae pv. oryzae (Xoo)”

✓ located verbatim in the source · abstract, characters 0–94 · show in text ↑
e1

“This study investigated the interaction between the bacteriophage XooG01 and flagellar proteins from Xoo H02 on the expression of resistance genes in rice”

✓ located verbatim in the source · abstract, characters 407–561 · show in text ↑
e2

“Leaves were pre-treated with a mixture of the phage and bacterial cell surface appendages before pathogen inoculation”

✓ located verbatim in the source · abstract, characters 563–680 · show in text ↑
e5

“The expression of Xa4 showed a slight, non-significant increase”

✓ located verbatim in the source · abstract, characters 1033–1096 · show in text ↑
Mechanismhypothesisoriginal resultbasis n/a

Claim · model-written summary

The suppression of Xa21 is likely due to phage-mediated interference in host-pathogen recognition, with the phage masking the flagellin elicitor from plant receptors

Outcome
suppression of Xa21e6
Qualifier
phage-mediated interference in the host-pathogen recognition process, likely by the phage physically masking the flagellin elicitore6

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“Xa genes expression in rice”

✓ located verbatim in the source · title, characters 80–107 · show in text ↑
e6

“This unexpected suppression of Xa21 suggests a phage-mediated interference in the host-pathogen recognition process, likely by the phage physically masking the flagellin elicitor from plant receptors”

✓ located verbatim in the source · abstract, characters 1098–1297 · show in text ↑