Paper · 2026 · Journal of Integrative Plant Biology

Plastid and nuclear phylogenomics of Cyphostemma (Vitaceae) provide new insights into genome size evolution across sub‐Saharan Africa

Rindra M. Ranaivoson; Romer N. Rabarijaona; Jin‐Ren Yu; et al.

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claims
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verbatim quotes
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citations
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research areas
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Open access · other-oa

Abstract

Genome size, the total amount of DNA content in the cell nucleus, varies greatly among flowering plants. One factor underlying this variation is the environment under which plants evolve. Given this premise, harsh environmental conditions in arid regions may profoundly influence genome evolution. However, the specific impact of aridification on genome size evolution, particularly for African lineages, remains largely unexplored. Here, we investigate linkages between genome size evolution and ecological adaptation using the genus Cyphostemma in the grape family (Vitaceae) as a model. Cyphostemma species exhibit genome size expansion and remarkable morphological traits in arid environments, including succulent stems or leaves and loss of tendrils. Our biogeographic reconstruction, based on substantial taxon sampling (112 of 200 species), reveals that Cyphostemma originated in continental Africa during the late Eocene to Oligocene and has undergone rapid radiation since the middle Miocene, coinciding with intensified aridification and geological activity in eastern Africa. Incorporating extensive data on traits, habitats, genome size, and chromosome numbers, we show that Cyphostemma species with the largest genomes are succulent polyploids restricted to nutrient-rich limestone outcrops. Broad-scale analyses across eudicots further confirm that larger genomes are significantly associated with both succulence and arid habitats. Our findings reveal a strong association between genome size expansion, polyploidy, and adaptive traits, indicating that genome size is a hitherto neglected trait associated with the radiation of succulent plants during the African aridification in the Cenozoic.

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The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 6

Associationobservedoriginal resultmeasured

Claim · model-written summary

Cyphostemma shows genome expansion and succulent morphology in arid environments.

Taxon
CyphostemmaCyphostemmae0
Outcome
genome size expansione0
Setting
arid environmentse0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Cyphostemma
Cyphostemma · Taxon · picture of the genus (one of its species)Marco Schmidt [1] · CC BY-SA 2.5 · Wikimedia Commons ↗

Verbatim

e0

“Cyphostemma species exhibit genome size expansion and remarkable morphological traits in arid environments, including succulent stems or leaves and loss of tendrils.”

✓ located verbatim in the source · abstract, characters 590–755 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Cyphostemma originated in continental Africa during the late Eocene to Oligocene.

Taxon
CyphostemmaCyphostemmae0
Outcome
originatede0
Qualifier
late Eocene to Oligocenee0
Setting
continental Africae0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Cyphostemma
Cyphostemma · Taxon · picture of the genus (one of its species)Marco Schmidt [1] · CC BY-SA 2.5 · Wikimedia Commons ↗

Verbatim

e0

“Cyphostemma originated in continental Africa during the late Eocene to Oligocene”

✓ located verbatim in the source · abstract, characters 861–941 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Cyphostemma rapidly radiated since the middle Miocene alongside eastern African aridification and geological activity.

Outcome
rapid radiatione0
Qualifier
since the middle Miocenee0
Setting
eastern Africae0

Not reportedTaxonDirection

Verbatim

e0

“has undergone rapid radiation since the middle Miocene, coinciding with intensified aridification and geological activity in eastern Africa”

✓ located verbatim in the source · abstract, characters 946–1085 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

The largest Cyphostemma genomes occur in succulent polyploids on nutrient-rich limestone outcrops.

Taxon
CyphostemmaCyphostemmae0
Material
succulent polyploidse0
Outcome
largest genomese0
Direction
largeste0
Setting
nutrient-rich limestone outcropse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Cyphostemma
Cyphostemma · Taxon · picture of the genus (one of its species)Marco Schmidt [1] · CC BY-SA 2.5 · Wikimedia Commons ↗

Verbatim

e0

“Cyphostemma species with the largest genomes are succulent polyploids restricted to nutrient-rich limestone outcrops”

✓ located verbatim in the source · abstract, characters 1187–1303 · show in text ↑
Associationobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Across eudicots, larger genomes are significantly associated with succulence.

Taxon
eudicotseudicotyledonse0
Organ / stage
succulencee0
Outcome
larger genomese0
Direction
largere0

Verbatim

e0

“Broad-scale analyses across eudicots further confirm that larger genomes are significantly associated with both succulence and arid habitats”

✓ located verbatim in the source · abstract, characters 1305–1445 · show in text ↑
Associationobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Across eudicots, larger genomes are significantly associated with arid habitats.

Taxon
eudicotseudicotyledonse0
Outcome
larger genomese0
Direction
largere0
Setting
arid habitatse0

Verbatim

e0

“Broad-scale analyses across eudicots further confirm that larger genomes are significantly associated with both succulence and arid habitats”

✓ located verbatim in the source · abstract, characters 1305–1445 · show in text ↑