Paper · 2026 · Machine Learning and Knowledge Extraction

Improving Ground Cover Crop Fractional Vegetation Mapping via Causality-Based Deep Representation Learning

Atif Latif; Masoumeh Hashemi; Matt Yost; et al.

5
claims
10
verbatim quotes
0
citations
2
research areas
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Open access · cc-by

Abstract

Semantic segmentation and deep learning methods have rarely been applied to fractional vegetation cover (FVC) segmentation tasks due to the lack of publicly available datasets for training deep learning models. FVC is a key indicator for assessing vegetation distribution, crop density, and crop responses to water availability and fertilizer application, yet conventional field-based measurement methods are time consuming, costly, labor intensive, and may lack the accuracy required for critical applications such as drought stress evaluation and water productivity. In this paper, we introduced causality-based deep learning techniques for FVC segmentation on a publicly available RGB dataset that consists of four ground cover crops: Phyla nodiflora L., Cynodon dactylon, Frankenia thymifolia Desf., and Oxalis stricta L. By separating causal from spurious correlations in pretrained features, using the stepwise intervention and reweighting (SIR) method at different encoder stages reduced confounding bias and enabled the models to learn more generalizable and task-relevant features. Extensive experiments on the FVC dataset, conducted with and without causality learning, showed that the proposed FCN + ResNet-50 model with causality learning and data augmentation achieved an accuracy of 94.80%, a precision of 94.97%, a recall of 94.35%, and an F1-score of 94.62%, which outperformed non-causal baselines and state-of-the-art transformer-based models including SegFormer and Mask2Former.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 5

Method / resourceobservedoriginal resultpositivemeasured

Claim · model-written summary

Stepwise intervention and reweighting reduced confounding bias and improved generalizable features.

Taxon
Phyla nodiflora L., Cynodon dactylon, Frankenia thymifolia Desf., and Oxalis stricta L.Cynodon dactylonOxalis strictaPhyla nodifloraFrankenia thymifoliae1
Outcome
confounding biase0
Direction
reducede0

Not reportedComparatorValue

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Cynodon dactylon
Cynodon dactylon · TaxonRobert Flogaus-Faust · CC BY 4.0 · Wikimedia Commons ↗
Oxalis stricta
Oxalis stricta · Taxon6th Happiness · CC BY-SA 3.0 · Wikimedia Commons ↗
Phyla nodiflora
Phyla nodiflora · TaxonGhislain118 http://www.fleurs-des-montagnes.net · CC BY-SA 3.0 · Wikimedia Commons ↗
Frankenia thymifolia
Frankenia thymifolia · TaxonGiacomo Braschi · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“using the stepwise intervention and reweighting (SIR) method at different encoder stages reduced confounding bias and enabled the models to learn more generalizable and task-relevant features”

✓ located verbatim in the source · abstract, characters 898–1089 · show in text ↑
e1

“four ground cover crops: Phyla nodiflora L., Cynodon dactylon, Frankenia thymifolia Desf., and Oxalis stricta L.”

✓ located verbatim in the source · abstract, characters 713–825 · show in text ↑
Method / resourceobservedoriginal resultpositivemeasured

Claim · model-written summary

The causal augmented model achieved 94.80% accuracy, outperforming comparison models.

Taxon
Phyla nodiflora L., Cynodon dactylon, Frankenia thymifolia Desf., and Oxalis stricta L.Cynodon dactylonOxalis strictaPhyla nodifloraFrankenia thymifoliae1
Outcome
accuracye0
Direction
outperformede0
Value
94.80%e0
Comparator
non-causal baselinese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Cynodon dactylon
Cynodon dactylon · TaxonRobert Flogaus-Faust · CC BY 4.0 · Wikimedia Commons ↗
Oxalis stricta
Oxalis stricta · Taxon6th Happiness · CC BY-SA 3.0 · Wikimedia Commons ↗
Phyla nodiflora
Phyla nodiflora · TaxonGhislain118 http://www.fleurs-des-montagnes.net · CC BY-SA 3.0 · Wikimedia Commons ↗
Frankenia thymifolia
Frankenia thymifolia · TaxonGiacomo Braschi · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“the proposed FCN + ResNet-50 model with causality learning and data augmentation achieved an accuracy of 94.80%, a precision of 94.97%, a recall of 94.35%, and an F1-score of 94.62%, which outperformed non-causal baselines and state-of-the-art transformer-based models including SegFormer and Mask2Former”

✓ located verbatim in the source · abstract, characters 1192–1496 · show in text ↑
e1

“four ground cover crops: Phyla nodiflora L., Cynodon dactylon, Frankenia thymifolia Desf., and Oxalis stricta L.”

✓ located verbatim in the source · abstract, characters 713–825 · show in text ↑
Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

The causal augmented model achieved 94.97% precision.

Taxon
Phyla nodiflora L., Cynodon dactylon, Frankenia thymifolia Desf., and Oxalis stricta L.Cynodon dactylonOxalis strictaPhyla nodifloraFrankenia thymifoliae1
Outcome
precisione0
Value
94.97%e0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Cynodon dactylon
Cynodon dactylon · TaxonRobert Flogaus-Faust · CC BY 4.0 · Wikimedia Commons ↗
Oxalis stricta
Oxalis stricta · Taxon6th Happiness · CC BY-SA 3.0 · Wikimedia Commons ↗
Phyla nodiflora
Phyla nodiflora · TaxonGhislain118 http://www.fleurs-des-montagnes.net · CC BY-SA 3.0 · Wikimedia Commons ↗
Frankenia thymifolia
Frankenia thymifolia · TaxonGiacomo Braschi · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“a precision of 94.97%”

✓ located verbatim in the source · abstract, characters 1305–1326 · show in text ↑
e1

“four ground cover crops: Phyla nodiflora L., Cynodon dactylon, Frankenia thymifolia Desf., and Oxalis stricta L.”

✓ located verbatim in the source · abstract, characters 713–825 · show in text ↑
Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

The causal augmented model achieved 94.35% recall.

Taxon
Phyla nodiflora L., Cynodon dactylon, Frankenia thymifolia Desf., and Oxalis stricta L.Cynodon dactylonOxalis strictaPhyla nodifloraFrankenia thymifoliae1
Outcome
recalle0
Value
94.35%e0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Cynodon dactylon
Cynodon dactylon · TaxonRobert Flogaus-Faust · CC BY 4.0 · Wikimedia Commons ↗
Oxalis stricta
Oxalis stricta · Taxon6th Happiness · CC BY-SA 3.0 · Wikimedia Commons ↗
Phyla nodiflora
Phyla nodiflora · TaxonGhislain118 http://www.fleurs-des-montagnes.net · CC BY-SA 3.0 · Wikimedia Commons ↗
Frankenia thymifolia
Frankenia thymifolia · TaxonGiacomo Braschi · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“a recall of 94.35%”

✓ located verbatim in the source · abstract, characters 1328–1346 · show in text ↑
e1

“four ground cover crops: Phyla nodiflora L., Cynodon dactylon, Frankenia thymifolia Desf., and Oxalis stricta L.”

✓ located verbatim in the source · abstract, characters 713–825 · show in text ↑
Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

The causal augmented model achieved 94.62% F1-score.

Taxon
Phyla nodiflora L., Cynodon dactylon, Frankenia thymifolia Desf., and Oxalis stricta L.Cynodon dactylonOxalis strictaPhyla nodifloraFrankenia thymifoliae1
Outcome
F1-scoree0
Value
94.62%e0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Cynodon dactylon
Cynodon dactylon · TaxonRobert Flogaus-Faust · CC BY 4.0 · Wikimedia Commons ↗
Oxalis stricta
Oxalis stricta · Taxon6th Happiness · CC BY-SA 3.0 · Wikimedia Commons ↗
Phyla nodiflora
Phyla nodiflora · TaxonGhislain118 http://www.fleurs-des-montagnes.net · CC BY-SA 3.0 · Wikimedia Commons ↗
Frankenia thymifolia
Frankenia thymifolia · TaxonGiacomo Braschi · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“an F1-score of 94.62%”

✓ located verbatim in the source · abstract, characters 1352–1373 · show in text ↑
e1

“four ground cover crops: Phyla nodiflora L., Cynodon dactylon, Frankenia thymifolia Desf., and Oxalis stricta L.”

✓ located verbatim in the source · abstract, characters 713–825 · show in text ↑