Paper · 2026 · Frontiers in Microbiology

Crop rotation-driven changes in secondary metabolites of potato rhizosphere soil exert stronger regulation on soil microbial community

Jinjin Li; Qingcheng Li; Mantang Wang; et al.

8
claims
13
verbatim quotes
1
citations
2
research areas
✓
Open access · cc-by

Abstract

Introduction: Crop rotation promotes ecological effects and production by regulating belowground processes, particularly the shaping of the rhizosphere soil microbiome. Rhizosphere metabolites are a key driver of belowground processes and play a crucial role in shaping soil microbial community composition. However, the rhizosphere metabolites of different potato rotations have rarely been reported, and the regulation of key metabolites on the rhizosphere soil microbiome remains unclear. Methods: )-potato rotation (V-P), to determine rhizosphere soil metabolites and analyze defense metabolites, and assess the soil bacterial and fungal diversity and community composition. Results: Compared to monoculture, the potato rotations had positive effects on growth and yield. Potato rotations had more primary metabolites, such as amino acids and carbohydrates and conjugates, but significantly reduced secondary metabolites with defensive functions in rhizosphere soils including phenols and other benzene derivatives, flavonoids, alkaloids and other N-containing compounds, and terpenoids. Potato rotation systems supported higher diversity of bacteria and fungi and enriched beneficial bacteria such as biocontrol, nitrogen fixation, C degradation, denitrification, and pollutant degradation bacteria, while suppressing pathogenic fungi in the rhizosphere soils. Rhizosphere soil metabolites strongly correlated with the microbial community composition. The secondary metabolites, which are predominantly alkaloids, terpenoids, and flavonoids, exerted a dominant regulatory effect on the composition of soil microbial community. Discussion: These results demonstrate the important regulation of rhizosphere metabolites on soil microbial community composition, deepening our understanding of the benefits of crop rotation via the belowground effect.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 8

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Potato rotations improved growth and yield relative to monoculture.

Treatment
potato rotationse0
Outcome
growth and yielde0
Direction
positive effectse0
Comparator
monoculturee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum tuberosum
Solanum tuberosum · TaxonScott Bauer, USDA ARS · Public domain · Wikimedia Commons ↗

Verbatim

e0

“Compared to monoculture, the potato rotations had positive effects on growth and yield.”

✓ located verbatim in the source · abstract, characters 688–775 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Potato rotations increased primary rhizosphere metabolites including amino acids and carbohydrates.

Treatment
Potato rotationse0
Outcome
primary metabolites, such as amino acids and carbohydrates and conjugatese0
Direction
moree0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum tuberosum
Solanum tuberosum · TaxonScott Bauer, USDA ARS · Public domain · Wikimedia Commons ↗

Verbatim

e0

“Potato rotations had more primary metabolites, such as amino acids and carbohydrates and conjugates”

✓ located verbatim in the source · abstract, characters 776–875 · show in text ↑
Intervention effectobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Potato rotations significantly reduced defensive secondary metabolites in rhizosphere soil.

Treatment
Potato rotationse1
Outcome
secondary metabolites with defensive functions in rhizosphere soilse0
Direction
reducede0
Qualifier
phenols and other benzene derivatives, flavonoids, alkaloids and other N-containing compounds, and terpenoidse0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum tuberosum
Solanum tuberosum · TaxonScott Bauer, USDA ARS · Public domain · Wikimedia Commons ↗

Verbatim

e0

“significantly reduced secondary metabolites with defensive functions in rhizosphere soils including phenols and other benzene derivatives, flavonoids, alkaloids and other N-containing compounds, and terpenoids”

✓ located verbatim in the source · abstract, characters 881–1090 · show in text ↑
e1

“Potato rotations had more primary metabolites”

✓ located verbatim in the source · abstract, characters 776–821 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Potato rotations supported higher rhizosphere bacterial and fungal diversity.

Treatment
Potato rotation systemse0
Outcome
diversity of bacteria and fungie0
Direction
highere0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum tuberosum
Solanum tuberosum · TaxonScott Bauer, USDA ARS · Public domain · Wikimedia Commons ↗

Verbatim

e0

“Potato rotation systems supported higher diversity of bacteria and fungi”

✓ located verbatim in the source · abstract, characters 1092–1164 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Potato rotations enriched beneficial rhizosphere bacteria.

Treatment
Potato rotation systemse1
Outcome
beneficial bacteriae0
Direction
enrichede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum tuberosum
Solanum tuberosum · TaxonScott Bauer, USDA ARS · Public domain · Wikimedia Commons ↗

Verbatim

e0

“enriched beneficial bacteria such as biocontrol, nitrogen fixation, C degradation, denitrification, and pollutant degradation bacteria”

✓ located verbatim in the source · abstract, characters 1169–1303 · show in text ↑
e1

“Potato rotation systems supported higher diversity of bacteria and fungi”

✓ located verbatim in the source · abstract, characters 1092–1164 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Potato rotations suppressed pathogenic fungi in rhizosphere soil.

Treatment
Potato rotation systemse1
Interactor
pathogenic fungie0pathogen
Outcome
pathogenic fungi in the rhizosphere soilse0
Direction
suppressinge0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum tuberosum
Solanum tuberosum · TaxonScott Bauer, USDA ARS · Public domain · Wikimedia Commons ↗

Verbatim

e0

“suppressing pathogenic fungi in the rhizosphere soils”

✓ located verbatim in the source · abstract, characters 1311–1364 · show in text ↑
e1

“Potato rotation systems supported higher diversity of bacteria and fungi”

✓ located verbatim in the source · abstract, characters 1092–1164 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Rhizosphere metabolites strongly correlated with microbial community composition.

Compound
Rhizosphere soil metabolitese0
Outcome
microbial community compositione0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum tuberosum
Solanum tuberosum · TaxonScott Bauer, USDA ARS · Public domain · Wikimedia Commons ↗

Verbatim

e0

“Rhizosphere soil metabolites strongly correlated with the microbial community composition.”

✓ located verbatim in the source · abstract, characters 1366–1456 · show in text ↑
t0

“potato rhizosphere soil”

✓ located verbatim in the source · title, characters 57–80 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

Secondary metabolites, mainly alkaloids, terpenoids and flavonoids, dominated regulation of microbial community composition.

Compound
secondary metabolitese0
Outcome
composition of soil microbial communitye0
Qualifier
predominantly alkaloids, terpenoids, and flavonoidse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum tuberosum
Solanum tuberosum · TaxonScott Bauer, USDA ARS · Public domain · Wikimedia Commons ↗

Verbatim

e0

“The secondary metabolites, which are predominantly alkaloids, terpenoids, and flavonoids, exerted a dominant regulatory effect on the composition of soil microbial community.”

✓ located verbatim in the source · abstract, characters 1457–1631 · show in text ↑
t0

“potato rhizosphere soil”

✓ located verbatim in the source · title, characters 57–80 · show in text ↑

rotation · disease · Solanum tuberosum (potato)Positive and negative results

17 papers: 8 positive, 9 negative or no effect

7 papers in the same direction as this paper · 9 in the opposite direction

  1. negative
    Wilt was most severe when potato followed fallow

    Effects of Green Manures on Verticillium Wilt of Potato · 1996 · compared with rape, Austrian winter pea, oat, and rye

    Opposite direction

  2. no effect
  3. negative

13 papers more in this group

See all 17 papers →

rotation · yield · Solanum tuberosum (potato)Positive and negative results

42 papers: 26 positive, 16 negative or no effect

25 papers in the same direction as this paper · 13 in the opposite direction · 3 reporting no difference from an alternative

  1. positive
  2. positive
  3. no effect

38 papers more in this group

See all 42 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.