Paper · 2026 · Resources Environment and Sustainability

Harnessing microbially fortified compost extracts to enhance rhizosphere dynamics and sustainably suppress Fusarium wilt in tomato

D. Lorente-Escanez; F. Suarez-Estrella; M.M. Jurado; et al.

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Open access · cc-by-nc-nd

Abstract

The risks associated with pesticide use have driven the search for sustainable alternatives. In this context, aqueous compost extracts, rich in bioactive compounds and beneficial microorganisms, have emerged as a promising strategy for plant protection by supporting both plant nutrition al and phytopathogen control. This study aimed to characterize an aqueous extract derived from vegetable waste compost and to evaluate the effect microbial fortification through inoculation with two microbial strains exhibiting glucanolytic and chitinolytic activities, followed by a one-week incubation period. Microbial abundance, functional metabolic diversity, and bacterial community structure were assessed, along with their effects on the rhizosphere and plant health in response to Fusarium oxysporum f.sp. lycopersici . Microbial enrichment resulted in an increased abundance of key microbial groups, as well as enhanced metabolic activity and diversity. In addition, fortification induced a clear shift in microbial community structure, reducing taxonomic dominance and promoting the establishment of inoculated bacterial families commonly associated with plant growth promotion and biocontrol. Application of the extracts via irrigation led to a rapid but transient increase in microbial abundance in the tomato rhizosphere. By the end of the experiment, treated plants exhibited improved vegetative development, with the fortified extract showing a consistent phytostimulant effect. Furthermore, pre-treatment with compost extracts effectively reduced disease severity caused by F. oxysporum. Overall, these results demonstrate that aqueous compost extracts contribute to disease mitigation, while microbial fortification further modulates microbial community structure and enhances agronomic performance, supporting their potential as a sustainable strategy for managing biotic stress in crops. • Bioaugmentation boosts microbial load and metabolic activity in compost extracts • Microbial enrichment increases microbiome diversity and richness in compost extract • Compost extracts promote rapid beneficial microbial colonization in the rhizosphere • Fortified compost extracts show significant phytostimulant effects on tomato plants • Preventive application reduces damage from Fusarium oxysporum f.sp. lycopersici

Abstract from the paper’s OpenAlex record; open copy licensed cc-by-nc-nd. Read at the source ↗

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Claims 5

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Fortification increased key microbial groups and metabolic activity and diversity in compost extract.

Treatment
Microbial enrichmente0
Outcome
abundance of key microbial groups, as well as enhanced metabolic activity and diversitye0
Direction
increasede0

Not reportedTaxonComparator

Verbatim

e0

“Microbial enrichment resulted in an increased abundance of key microbial groups, as well as enhanced metabolic activity and diversity”

✓ located verbatim in the source · abstract, characters 817–950 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Fortification shifted community structure, reduced taxonomic dominance and promoted inoculated families.

Treatment
fortificatione0
Outcome
microbial community structuree0
Direction
shifte0

Not reportedTaxonComparator

Verbatim

e0

“fortification induced a clear shift in microbial community structure, reducing taxonomic dominance and promoting the establishment of inoculated bacterial families”

✓ located verbatim in the source · abstract, characters 965–1128 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Extract irrigation caused a rapid, transient increase in tomato rhizosphere microbial abundance.

Treatment
Application of the extracts via irrigatione0
Outcome
microbial abundance in the tomato rhizospheree0
Direction
increasee0
Qualifier
rapid but transiente0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Application of the extracts via irrigation led to a rapid but transient increase in microbial abundance in the tomato rhizosphere”

✓ located verbatim in the source · abstract, characters 1193–1322 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Treated tomato plants showed improved vegetative development.

Treatment
fortified extracte0
Outcome
vegetative developmente0
Direction
improvede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“treated plants exhibited improved vegetative development, with the fortified extract showing a consistent phytostimulant effect”

✓ located verbatim in the source · abstract, characters 1354–1481 · show in text ↑
t0

“tomato”

✓ located verbatim in the source · title, characters 124–130 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Compost extract pretreatment reduced Fusarium wilt severity.

Treatment
pre-treatment with compost extractse0
Interactor
F. oxysporumFusarium oxysporume0pathogen
Outcome
disease severity caused by F. oxysporume0
Direction
reducede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗
Fusarium oxysporum
Fusarium oxysporum · InteractorClemson University - USDA Cooperative Extension Slide Series · CC BY 3.0 · Wikimedia Commons ↗

Verbatim

e0

“pre-treatment with compost extracts effectively reduced disease severity caused by F. oxysporum”

✓ located verbatim in the source · abstract, characters 1496–1591 · show in text ↑
t0

“tomato”

✓ located verbatim in the source · title, characters 124–130 · show in text ↑

irrigation · soil: biology · Solanum lycopersicum (tomato)Positive and negative results

5 papers: 4 positive, 1 negative or no effect

3 papers in the same direction as this paper · 1 in the opposite direction

  1. no effect
  2. positive
  3. positive

1 paper more in this group

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botanical · soil: biology · Solanum lycopersicum (tomato)Positive and negative results

8 papers: 7 positive, 1 negative or no effect

6 papers in the same direction as this paper · 1 in the opposite direction

  1. negative
  2. positive
  3. positive

4 papers more in this group

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botanical · Fusarium oxysporum · Solanum lycopersicum (tomato)Positive and negative results

25 papers: 23 positive, 2 negative or no effect

22 papers in the same direction as this paper · 2 in the opposite direction

  1. no effect
  2. no effect
  3. positive

21 papers more in this group

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botanical · growth · Solanum lycopersicum (tomato)Positive and negative results

291 papers: 203 positive, 88 negative or no effect

202 papers in the same direction as this paper · 87 in the opposite direction · 1 reporting no difference from an alternative

  1. no effect
  2. negative
  3. negative

287 papers more in this group

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fertilization · Fusarium oxysporum · Solanum lycopersicum (tomato)Results agree

5 papers: 5 positive, 0 negative or no effect

4 papers in the same direction as this paper

  1. positive
  2. positive
  3. positive

1 paper more in this group

See all 5 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.