Paper · 2026 · Remote Sensing

Multi-Source Time-Series Integration for Progressive In-Season Prediction of Rice Yield, Aboveground Biomass, and Harvest Index

Sunil Kumar Jha; James Brinkhoff; Andrew J. Robson; et al.

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Open access · cc-by

Abstract

Timely and accurate assessment of rice productivity, encompassing grain yield, aboveground biomass (AGB), and harvest index (HI), is essential for harvest planning, supply chain coordination, and food security. This study evaluates the feasibility of predicting all three productivity components using satellite and weather time series data while examining trade-offs between forecast accuracy and operational lead time. Five machine learning models (CatBoost, Gaussian Process Regression (GPR), Random Forest, Ridge regression, and TabPFN) were compared across six in-season prediction windows (December to May) using Sentinel-2 vegetation indices (Normalized Difference Vegetation Index (NDVI), Chlorophyll Index Red Edge 2 (CIRE2), Land Surface Water Index (LSWI)), weather variables (minimum and maximum temperature and radiation), and agronomic records from 256 commercial and experimental rice fields in southern New South Wales, Australia, over four growing seasons (2022–2025) using leave-one-year-out cross-validation. Rolling in-season forecasts were evaluated across December–May; March was selected for further analysis as a practical window that balances accuracy and timeliness for decision-making, with minimal additional error reduction in later months closer to harvest. TabPFN had the lowest RMSE for yield prediction (RMSE = 1.85 t ha−1, r=0.72), Ridge had the lowest RMSE for AGB (RMSE = 3.05 t ha−1, r=0.77), while tree-based models yielded the lowest RMSE for derived HI (RMSE ≈ 0.07). HI prediction showed weak regional relationships, with direct prediction yielding |r|≈0.24 and derived HI (predicted yield divided by predicted AGB) showing r≈0. Although strong correlations (r>0.9) between HI and vegetation indices were observed within individual site-seasons, consistent with other studies, these relationships were highly variable across site-seasons, reflecting the difficulty of inferring HI from canopy reflectance when biotic and/or abiotic stresses decouple AGB accumulation from grain filling. Both direct and derived HI approaches yielded comparable errors, indicating that satellite and weather data lack information content for regional-scale HI prediction. These findings support satellite-based yield and AGB forecasting for operational use.

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Claims 10

Method / resourceauthor interpretationoriginal resultpositivemeasured

Claim · model-written summary

March balanced forecast accuracy and lead time, with little later error reduction.

Outcome
accuracy and timelinesse0
Comparator
later monthse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“March was selected for further analysis as a practical window that balances accuracy and timeliness for decision-making, with minimal additional error reduction in later months closer to harvest”

✓ located verbatim in the source · abstract, characters 1092–1286 · show in text ↑
t0

“Rice”

✓ located verbatim in the source · title, characters 77–81 · show in text ↑
Method / resourceobservedoriginal resultpositivemeasured

Claim · model-written summary

TabPFN had the lowest yield prediction RMSE of 1.85 t ha−1.

Outcome
RMSE for yield predictione0
Direction
loweste0
Value
1.85 t ha−1e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“TabPFN had the lowest RMSE for yield prediction (RMSE = 1.85 t ha−1, r=0.72)”

✓ located verbatim in the source · abstract, characters 1288–1364 · show in text ↑
t0

“Rice”

✓ located verbatim in the source · title, characters 77–81 · show in text ↑
Method / resourceobservedoriginal resultpositivemeasured

Claim · model-written summary

Ridge had the lowest biomass prediction RMSE of 3.05 t ha−1.

Outcome
RMSE for AGBe0
Direction
loweste0
Value
3.05 t ha−1e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Ridge had the lowest RMSE for AGB (RMSE = 3.05 t ha−1, r=0.77)”

✓ located verbatim in the source · abstract, characters 1366–1428 · show in text ↑
t0

“Rice”

✓ located verbatim in the source · title, characters 77–81 · show in text ↑
Method / resourceobservedoriginal resultpositivemeasured

Claim · model-written summary

Tree-based models had the lowest derived harvest index RMSE, about 0.07.

Outcome
RMSE for derived HIe0
Direction
loweste0
Value
0.07e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“tree-based models yielded the lowest RMSE for derived HI (RMSE ≈ 0.07)”

✓ located verbatim in the source · abstract, characters 1436–1506 · show in text ↑
t0

“Rice”

✓ located verbatim in the source · title, characters 77–81 · show in text ↑
Method / resourceobservedoriginal resultnegativemeasured

Claim · model-written summary

Direct harvest index prediction had weak regional correlation of about 0.24.

Outcome
regional relationshipse0
Value
0.24e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“HI prediction showed weak regional relationships, with direct prediction yielding |r|≈0.24”

✓ located verbatim in the source · abstract, characters 1508–1598 · show in text ↑
t0

“Rice”

✓ located verbatim in the source · title, characters 77–81 · show in text ↑
Method / resourceobservedoriginal resultnegativemeasured

Claim · model-written summary

Derived harvest index prediction had regional correlation near zero.

Outcome
derived HIe0
Value
0e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“derived HI (predicted yield divided by predicted AGB) showing r≈0”

✓ located verbatim in the source · abstract, characters 1603–1668 · show in text ↑
t0

“Rice”

✓ located verbatim in the source · title, characters 77–81 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Within site-seasons, harvest index correlated strongly with vegetation indices.

Outcome
correlationse0
Value
r>0.9e0
Setting
individual site-seasonse0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“strong correlations (r>0.9) between HI and vegetation indices were observed within individual site-seasons”

✓ located verbatim in the source · abstract, characters 1679–1785 · show in text ↑
t0

“Rice”

✓ located verbatim in the source · title, characters 77–81 · show in text ↑
Observationobservedoriginal resultnegativemeasured

Claim · model-written summary

The harvest index and vegetation index relationships varied greatly across site-seasons.

Outcome
relationships were highly variable across site-seasonse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“these relationships were highly variable across site-seasons”

✓ located verbatim in the source · abstract, characters 1818–1878 · show in text ↑
t0

“Rice”

✓ located verbatim in the source · title, characters 77–81 · show in text ↑
Method / resourceobservedoriginal resultno effectmeasured

Claim · model-written summary

Direct and derived harvest index approaches had comparable errors.

Outcome
errorse0
Comparator
direct and derived HI approachese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“Both direct and derived HI approaches yielded comparable errors”

✓ located verbatim in the source · abstract, characters 2028–2091 · show in text ↑
t0

“Rice”

✓ located verbatim in the source · title, characters 77–81 · show in text ↑
Recommendationauthor interpretationoriginal resultpositivebasis n/a

Claim · model-written summary

The authors support satellite yield and biomass forecasting for operational use.

Outcome
satellite-based yield and AGB forecasting for operational usee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa
Oryza sativa · Taxon · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

e0

“These findings support satellite-based yield and AGB forecasting for operational use”

✓ located verbatim in the source · abstract, characters 2195–2279 · show in text ↑
t0

“Rice”

✓ located verbatim in the source · title, characters 77–81 · show in text ↑