Paper · 2026 · Environmental Microbiology Reports

Functional Diversity and Community Composition of Soil Fungi Associated With Canopy Dieback in Araucaria araucana Forests of Contrasting Edaphic Conditions

Valeria Arriagada; Adrian Garrido; Francisca Madariaga; et al.

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Open access · cc-by

Abstract

BACKGROUND: Soil fungal communities play vital roles in forest ecosystem functioning, yet their relationship with tree health remains insufficiently characterized in many endangered species. AIMS: This study, investigated the composition and functional structure of soil fungi associated with symptomatic and asymptomatic individuals of Araucaria araucana in the Nahuelbuta Coastal Range, Chile. MATERIALS AND METHODS: Using high-throughput ITS1 sequencing and trait-based annotation, we compared fungal assemblages across two forest sectors with contrasting edaphic conditions. RESULTS: Marked differences in taxonomic and functional composition were observed between sites, with more even and functionally diverse communities in less restrictive soils. Within this site, where both tree health conditions co-occur, no significant differences in alpha or beta diversity were detected; nevertheless, species-level and functional guild analyses revealed shifts in composition. A shared core microbiome included taxa putatively identified as endophytes, including Cladophialophora minutissima, Fraxinicola europaea, Linnemannia hyalina, saprotrophs (Solicoccozyma terricola, Helicodendron conglomeratum, Pseudogymnoascus roseus) and a plant pathogen (Penicillium excelsum). Symptomatic trees harboured unique stress-tolerant taxa, including cold-adapted saprotrophs and ericoid mycorrhizal fungi, while asymptomatic trees supported lignocellulose decomposers, mutualists and early-successional symbionts. DISCUSSION: The observed fungal shifts suggest that canopy dieback is associated with a functional reorganization of the rhizosphere microbiome rather than a simple loss of diversity. CONCLUSION: These findings provide new insights into the fungal ecology of A. araucana forest and contribute to understanding how soil microbiomes respond to forest decline under contrasting edaphic conditions.

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Claims 7

Observationobservedoriginal resultmeasured

Claim · model-written summary

Fungal taxonomic and functional composition differed markedly between forest sites.

Taxon
Araucaria araucanaAraucaria araucanat0
Outcome
taxonomic and functional compositione0
Setting
sitese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Araucaria araucana
Araucaria araucana · TaxonVicente Fernández Rioja · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Marked differences in taxonomic and functional composition were observed between sites”

✓ located verbatim in the source · abstract, characters 588–674 · show in text ↑
t0

“Araucaria araucana”

✓ located verbatim in the source · title, characters 95–113 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Less restrictive soils had more even and functionally diverse fungal communities.

Taxon
Araucaria araucanaAraucaria araucanat0
Outcome
even and functionally diverse communitiese0
Direction
moree0
Setting
less restrictive soilse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Araucaria araucana
Araucaria araucana · TaxonVicente Fernández Rioja · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“more even and functionally diverse communities in less restrictive soils”

✓ located verbatim in the source · abstract, characters 681–753 · show in text ↑
t0

“Araucaria araucana”

✓ located verbatim in the source · title, characters 95–113 · show in text ↑
Associationobservedoriginal resultno effectnot significant (as stated)measured

Claim · model-written summary

Fungal alpha and beta diversity did not differ significantly between tree health conditions at the site where both occurred.

Taxon
Araucaria araucanaAraucaria araucanat0
Outcome
alpha or beta diversitye0
Direction
no significant differencese0
Comparator
both tree health conditionse0
Setting
this sitee0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Araucaria araucana
Araucaria araucana · TaxonVicente Fernández Rioja · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Within this site, where both tree health conditions co-occur, no significant differences in alpha or beta diversity were detected”

✓ located verbatim in the source · abstract, characters 755–884 · show in text ↑
t0

“Araucaria araucana”

✓ located verbatim in the source · title, characters 95–113 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Species-level and functional guild composition shifted between tree health conditions.

Taxon
Araucaria araucanaAraucaria araucanat0
Outcome
shifts in compositione0
Setting
species-level and functional guild analysese0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Araucaria araucana
Araucaria araucana · TaxonVicente Fernández Rioja · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“species-level and functional guild analyses revealed shifts in composition”

✓ located verbatim in the source · abstract, characters 900–974 · show in text ↑
t0

“Araucaria araucana”

✓ located verbatim in the source · title, characters 95–113 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

A shared core microbiome contained putative endophytes, saprotrophs and a plant pathogen.

Taxon
Araucaria araucanaAraucaria araucanat0
Interactor
Penicillium excelsumPenicillium excelsume0pathogen
Outcome
shared core microbiomee0
Qualifier
taxa putatively identified as endophytese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Araucaria araucana
Araucaria araucana · TaxonVicente Fernández Rioja · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“A shared core microbiome included taxa putatively identified as endophytes, including Cladophialophora minutissima, Fraxinicola europaea, Linnemannia hyalina, saprotrophs (Solicoccozyma terricola, Helicodendron conglomeratum, Pseudogymnoascus roseus) and a plant pathogen (Penicillium excelsum)”

✓ located verbatim in the source · abstract, characters 976–1270 · show in text ↑
t0

“Araucaria araucana”

✓ located verbatim in the source · title, characters 95–113 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Symptomatic trees harboured unique stress-tolerant taxa including cold-adapted saprotrophs and ericoid mycorrhizal fungi.

Taxon
Araucaria araucanaAraucaria araucanat0
Interactor
ericoid mycorrhizal fungie0symbiont
Outcome
unique stress-tolerant taxae0
Qualifier
Symptomatic treese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Araucaria araucana
Araucaria araucana · TaxonVicente Fernández Rioja · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“Symptomatic trees harboured unique stress-tolerant taxa, including cold-adapted saprotrophs and ericoid mycorrhizal fungi”

✓ located verbatim in the source · abstract, characters 1272–1393 · show in text ↑
t0

“Araucaria araucana”

✓ located verbatim in the source · title, characters 95–113 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Asymptomatic trees supported lignocellulose decomposers, mutualists and early-successional symbionts.

Taxon
Araucaria araucanaAraucaria araucanat0
Interactor
early-successional symbiontse0symbiont
Outcome
lignocellulose decomposers, mutualists and early-successional symbiontse0
Qualifier
asymptomatic treese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Araucaria araucana
Araucaria araucana · TaxonVicente Fernández Rioja · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“asymptomatic trees supported lignocellulose decomposers, mutualists and early-successional symbionts”

✓ located verbatim in the source · abstract, characters 1401–1501 · show in text ↑
t0

“Araucaria araucana”

✓ located verbatim in the source · title, characters 95–113 · show in text ↑