Search claims · PlantClaims

Observationobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Presence/absence polymorphisms exceeded nucleotide polymorphisms among 1032 secreted protein genes.

Taxon: RiceOryza sativat0
Interactor: secreted protein genese0
Outcome: presence/absence polymorphismse0
Direction: moree0
Value: 1032 putative secreted protein genese0

Not reportedInteractor role

Verbatim

e0
“significantly more presence/absence polymorphisms than nucleotide polymorphisms among 1032 putative secreted protein genes”
✓ located verbatim in the source · abstract, characters 550–672

t0
“Rice”
✓ located verbatim in the source · title, characters 67–71

Title

Association Genetics Reveals Three Novel Avirulence Genes from the Rice Blast Fungal Pathogen Magnaporthe oryzae

Kentaro Yoshida; Hiromasa Saitoh; Shizuko Fujisawa; et al. The Plant Cell 2009. doi:10.1105/tpc.109.066324

Other claims from this paper (10)

Observation M. oryzae nucleotide diversity was extremely low across 46 isolates.
Association No association between DNA polymorphism and avirulence was identified.
Observation Ina168 has 1.68 Mb of regions absent from isolate 70-15.
Observation Those regions comprised 316 candidate effector genes.
Observation AVR-Pia was identified as a novel avirulence gene recognized in rice.
Observation AVR-Pii was identified as a novel avirulence gene recognized in rice.
Observation AVR-Pik/km/kp was identified as a novel avirulence gene recognized in rice.
Observation AVR-Pia evolved by gene gain/loss.
Observation AVR-Pii evolved by gene gain/loss.
Observation AVR-Pik/km/kp evolved by nucleotide substitutions and gene gain/loss.

Associationobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Domesticated plants had significantly more coding-region polymorphisms than noncoding-region polymorphisms.

Taxon: Phaseolus vulgarisPhaseolus vulgarise1
Material: domesticated plantse0
Outcome: frequency of polymorphismse0
Direction: highere0
Comparator: noncoding regionse0

Verbatim

e0
“the significantly higher frequency of polymorphisms in the coding regions observed only in the domesticated plants (compared to noncoding regions)”
✓ located verbatim in the source · abstract, characters 783–929

e1
“Phaseolus vulgaris by sequencing”
✓ located verbatim in the source · abstract, characters 390–422

Title

High Level of Nonsynonymous Changes in Common Bean Suggests That Selection under Domestication Increased Functional Diversity at Target Traits

Elena Bitocchi; Domenico Rau; Andrea Benazzo; et al. Frontiers in Plant Science 2017. doi:10.3389/fpls.2016.02005

Other claims from this paper (4)

Observation Domesticated bean germplasm had excess nonsynonymous mutations.
Observation Four genes were strongly selected during domestication.
Observation Each selection candidate relates to abiotic-stress resistance or tolerance.
Mechanism Domestication likely increased functional diversity at target loci.

Observationobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Polymorphisms were significantly enriched at some satellite sites.

Taxon: ArabidopsisArabidopsist0
Outcome: polymorphismse0
Direction: enrichede0
Qualifier: some sitese0

Verbatim

e0
“polymorphisms are significantly enriched at some sites”
✓ located verbatim in the source · abstract, characters 614–668

t0
“Arabidopsis”
✓ located verbatim in the source · title, characters 27–38

Title

Centromere Satellites From Arabidopsis Populations: Maintenance of Conserved and Variable Domains

Sarah E. Hall; Gregory Kettler; Daphne Preuss Genome Research 2003. doi:10.1101/gr.593403

Other claims from this paper (5)

Observationobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Significant RAPD polymorphisms were detected within each Ipomoea species.

Taxon: IpomoeaIpomoeat0
Outcome: RAPD polymorphismse1
Qualifier: within each speciese1

Verbatim

t0
“FOUR IPOMOEA SPECIES”
✓ located verbatim in the source · title, characters 42–62

e1
“Significant RAPD polymorphisms were detected within each species”
✓ located verbatim in the source · abstract, characters 253–317

Title

INTER- AND INTRA-SPECIFIC VARIATION AMONG FOUR IPOMOEA SPECIES AS DETECTED BY RAPD ANALYSIS

Dapeng Zhang; Wanda Collins HortScience 1995. doi:10.21273/hortsci.30.3.442e

Other claims from this paper (4)

Associationobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Some VvPel polymorphisms were significantly associated with berry texture parameters.

Taxon: grapevineVitist0
Gene: VvPele1
Outcome: texture parameterse0

Not reportedDirection

Verbatim

e0
“Some of the polymorphisms associated significantly with texture parameters”
✓ located verbatim in the source · abstract, characters 1027–1101

e1
“VvPel sequence”
✓ located verbatim in the source · abstract, characters 953–967

t0
“grapevine”
✓ located verbatim in the source · title, characters 85–94

Title

Polymorphisms inVvPelassociate with variation in berry texture and bunch size in the grapevine

A.M. Vargas; C. Fajardo; J. Borrego; et al. Australian Journal of Grape and Wine Research 2013. doi:10.1111/ajgw.12029

Other claims from this paper (7)

Observation Thirty-two SNPs were identified in VvPel.
Observation Fifteen haplotypes were identified in VvPel.
Observation Linkage disequilibrium was low enough for high-resolution analysis.
Association Some VvPel polymorphisms were significantly associated with bunch size.
Association Associated polymorphisms explained part of the variation in texture and bunch size.
Recommendation S1027 and S405/S441 were proposed as promising berry texture candidates.
Recommendation S48/S1030 were proposed as promising bunch-size candidates.

Observationobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Significant nucleotide polymorphisms occurred among genotypes.

Taxon: Hibiscus rosa-sinensisHibiscus rosa-sinensist0
Outcome: nucleotide polymorphismse0

Verbatim

t0
“Hibiscus rosa-sinensis”
✓ located verbatim in the source · title, characters 71–93

e0
“different significant nucleotide polymorphisms among genotypes that were observed”
✓ located verbatim in the source · abstract, characters 535–616

Title

Isolation of a Sequence Homolog to More Axillary Branches MAX2 Gene in Hibiscus rosa-sinensis and its Use as Genetic Marker

Luca Braglia; F. Nicoletti; Laura Benedetti; et al. IRIS UNIMORE (University of Modena and Reggio Emilia) 2015

Other claims from this paper (5)

Observation A MAX2 orthologous element was identified and isolated in Hibiscus.
Method / resource A gene fragment was cloned and sequenced from nineteen cultivars and twelve Hibiscus species.
Observation DNA sequences were highly conserved among cultivars and compatible wild species.
Observation Deduced Hibiscus sequences contained four repeat regions highly similar to MAX2 homologs.
Method / resource The cloned fragment is a likely candidate for validation as a marker of compact habit.

Associationobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Some VvPel polymorphisms were significantly associated with bunch size.

Taxon: grapevineVitist0
Gene: VvPele1
Outcome: bunch sizee0

Not reportedDirection

Verbatim

e0
“Some of the polymorphisms associated significantly with texture parameters and with bunch size”
✓ located verbatim in the source · abstract, characters 1027–1121

e1
“VvPel sequence”
✓ located verbatim in the source · abstract, characters 953–967

t0
“grapevine”
✓ located verbatim in the source · title, characters 85–94

Title

Polymorphisms inVvPelassociate with variation in berry texture and bunch size in the grapevine

A.M. Vargas; C. Fajardo; J. Borrego; et al. Australian Journal of Grape and Wine Research 2013. doi:10.1111/ajgw.12029

Other claims from this paper (7)

Observation Thirty-two SNPs were identified in VvPel.
Observation Fifteen haplotypes were identified in VvPel.
Observation Linkage disequilibrium was low enough for high-resolution analysis.
Association Some VvPel polymorphisms were significantly associated with berry texture parameters.
Association Associated polymorphisms explained part of the variation in texture and bunch size.
Recommendation S1027 and S405/S441 were proposed as promising berry texture candidates.
Recommendation S48/S1030 were proposed as promising bunch-size candidates.

Observationobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Polymorphisms were significantly more frequent in introns than exons.

Taxon: Medicago truncatulaMedicago truncatulat0
Outcome: Polymorphismse0
Direction: more frequente0
Comparator: exon regionse0

Verbatim

e0
“Polymorphisms were significantly more frequent in intron vs. exon regions”
✓ located verbatim in the source · abstract, characters 494–567

t0
“Medicago truncatula”
✓ located verbatim in the source · title, characters 31–50

Title

A Sequence-Based Genetic Map ofMedicago truncatulaand Comparison of Marker Colinearity withM. sativa

Hong-Kyu Choi; Dongjin Kim; Taesik Uhm; et al. Genetics 2004. doi:10.1534/genetics.166.3.1463

Other claims from this paper (5)

Method / resource A core M. truncatula map included 288 markers spanning 513 cM.
Method / resource Genetic and cytogenetic analysis resolved eight linkage groups.
Method / resource EST primers enabled rapid mapping of genes in M. sativa.
Method / resource The comparative map contained 68 bridging markers.
Observation The two Medicago genomes were highly similar.

Observationobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

198 expression polymorphisms linked significantly to chromosomal regions.

Taxon: Arabidopsis thalianaArabidopsis thalianat0
Outcome: expression polymorphisms were significantly linked to specific chromosomal regionse0
Value: 198e0

Verbatim

e0
“A total of 198 expression polymorphisms were significantly linked to specific chromosomal regions (P < 0.05)”
✓ located verbatim in the source · abstract, characters 441–549

t0
“Arabidopsis thaliana recombinant inbred lines”
✓ located verbatim in the source · abstract, characters 256–301

Title

Genetic dissection of transcriptional regulation by cDNA‐AFLP

Marnik Vuylsteke; Hilde Van Den Daele; Annelies Vercauteren; et al. The Plant Journal 2006. doi:10.1111/j.1365-313x.2005.02630.x

Other claims from this paper (4)

Observation cDNA-AFLP intensity polymorphisms had median heritability of 0.30.
Association Both cis- and trans-acting loci correlated with gene expression variation.
Association Some trans-acting loci correlated with multiple expression polymorphisms.
Method / resource cDNA-AFLP generated quantitative profiles suitable for eQTL mapping.

Associationobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Two ZmGA3ox2 polymorphisms were significantly associated with plant height.

Gene: ZmGA3ox2e0
Outcome: plant heighte0
Value: two polymorphismse0

Not reportedTaxonDirection

Verbatim

e0
“two polymorphisms in ZmGA3ox2 that were significantly associated with plant height across two experiments”
✓ located verbatim in the source · abstract, characters 952–1057

Title

ZmGA3ox2, a candidate gene for a major QTL,qPH3.1, for plant height in maize

Feng Teng; Lihong Zhai; Ruixiang Liu; et al. The Plant Journal 2012. doi:10.1111/tpj.12038

Other claims from this paper (9)

Observation qPH3.1 was identified on chromosome 3.
Observation Zong3 and SL15 differed in plant height.
Intervention effect Exogenous gibberellin A(3) eliminated the line height difference.
Method / resource qPH3.1 mapped to 4.0 cM and explained 32.3% of height variance.
Method / resource Isolines narrowed qPH3.1 to 12.6 kb.
Observation ZmGA3ox2 was positionally cloned as an OsGA3ox2 ortholog encoding GA3 β-hydroxylase.
Observation SL15 had higher ZmGA3ox2 expression than Zong3.
Mechanism Higher GA(1) accumulation led to longer SL15 internodes through longer cells.
Mechanism A large ZmGA3ox2 coding deletion causes the d1-6016 dwarf mutant.

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