By interacting organism › Bacteria › Desulfovibrionaceae

Mechanismobservedoriginal resultpositivemeasured

Claim · model-written summary

Shoot-to-root signaling recruited Desulfovibrio, Gallionellaceae, and Bacillus.

Taxon: RiceOryza sativat0
Interactor: DesulfovibrioDesulfovibrioe0symbiont
Second interactor: GallionellaceaeGallionellaceaee0symbiont
Outcome: recruited functional microbese0
Qualifier: shoot-to-root signalinge1

Verbatim

e0
“recruited functional microbes ( Desulfovibrio, Gallionellaceae, and Bacillus )”
✓ located verbatim in the source · abstract, characters 828–906

e1
“this shoot-to-root signaling induced rhizosphere metabolic reprogramming”
✓ located verbatim in the source · abstract, characters 686–758

t0
“Rice”
✓ located verbatim in the source · title, characters 75–79

Title

Foliar Silicon Nanoparticles Induce Coordinated Defense against Cadmium in Rice via Jasmonate-Mediated Metabolic Reprogramming

Linfeng Li; Min Chen; Fenghua Zhai; et al. Journal of Agricultural and Food Chemistry 2026. doi:10.1021/acs.jafc.5c14175

Other claims from this paper (7)

Intervention effect At 100 mg/L, silicon nanoparticles reduced grain cadmium by 66.58%.
Intervention effect At 100 mg/L, silicon nanoparticles increased rice yield by 38.14%.
Mechanism Silicon nanoparticle activated jasmonate signaling promoted cadmium sequestration in leaf hemicellulose 2 by 8.94%.
Observation Silicon nanoparticles upregulated OsHMA3.
Observation Silicon nanoparticles downregulated OsNramp1, OsZIP1, and OsZIP7.
Mechanism Shoot-to-root signaling induced rhizosphere accumulation of secondary metabolites, lipids, and fatty acids.
Mechanism The rhizosphere changes reduced bioavailable cadmium by 17.02%.

Observationobservedoriginal resultmeasured

Claim · model-written summary

Desulfovibrio dominated the endophytic bacteria in apple leaf tissues.

Taxon: AppleMalus domesticat0
Organ / stage: leaf tissuese1
Interactor: DesulfovibrioDesulfovibrioe1other
Outcome: Desulfovibrio dominatede1

Verbatim

t0
“Apple”
✓ located verbatim in the source · title, characters 91–96

e1
“Desulfovibrio dominated the leaf tissues”
✓ located verbatim in the source · abstract, characters 719–759

Title

Genetic Diversity and Growth-Promoting Functions of Endophytic Nitrogen-Fixing Bacteria in Apple

Hongshan Liu; Huan Cheng; Suwen Xu; et al. Plants 2025. doi:10.3390/plants14081235

Other claims from this paper (14)

Mechanismhypothesisoriginal resultmeasured

Claim · model-written summary

Desulfovibrio and Lachnospiraceae are candidate bacteria involved in the nutritional uptake of fig wasps.

Taxon: FicusFicuse2
Interactor: DesulfovibrioDesulfovibrioe6symbiont
Second interactor: LachnospiraceaeLachnospiraceaee6symbiont
Outcome: nutritional uptakee6

Verbatim

e2
“associated with the Ficus trees”
✓ located verbatim in the source · abstract, characters 812–843

e6
“some bacteria such as Desulfovibrio and Lachnospiraceae are candidates involved in the nutritional uptake of fig wasps”
✓ located verbatim in the source · abstract, characters 1639–1757

Title

Diversity and metabolic potentials of microbial communities associated with pollinator and cheater fig wasps in fig-fig wasp mutualism system

Yiyi Dong; Zheng-Ren Zhang; Sandhya Mishra; et al. Frontiers in Microbiology 2022. doi:10.3389/fmicb.2022.1009919

Other claims from this paper (5)

Observationobservedoriginal resultmeasured

Claim · model-written summary

Desulfobacteraceae and Desulfovibrionaceae were dominant diazotrophs in mangrove rhizospheres.

Taxon: mangrovet0
Interactor: Desulfobacteraceae and DesulfovibrionaceaeDesulfovibrionaceae Desulfobacteraceaee0other
Outcome: dominant diazotrophse0

Verbatim

e0
“Sulfate-reducing bacteria belonging to the Desulfobacteraceae and Desulfovibrionaceae were the dominant diazotrophs.”
✓ located verbatim in the source · abstract, characters 893–1009

t0
“Mangrove”
✓ located verbatim in the source · title, characters 55–63

Title

Diversity and Structure of Diazotrophic Communities in Mangrove Rhizosphere, Revealed by High-Throughput Sequencing

Yanying Zhang; Qingsong Yang; Juan Ling; et al. Frontiers in Microbiology 2017. doi:10.3389/fmicb.2017.02032

Other claims from this paper (10)

Observationobservedoriginal resultmeasured

Claim · model-written summary

Desulfovibrio magneticus RS-1 was a specific bacterium of old roots on September 12.

Taxon: riceOryza sativae0
Organ / stage: old rootse2
Interactor: Desulfovibrio magneticus RS-1Solidesulfovibrio magneticus RS-1e2symbiont
Outcome: specific bacteriae1
Qualifier: on September 12e2

Verbatim

e0
“nodal roots of rice plants”
✓ located verbatim in the source · title, characters 38–64

e1
“Some specific bacteria”
✓ located verbatim in the source · abstract, characters 1539–1561

e2
“Desulfovibrio magneticus RS-1 in old roots on September 12”
✓ located verbatim in the source · abstract, characters 2148–2206

Title

Bacterial communities associated with nodal roots of rice plants along with the growth stages: Estimation by PCR-DGGE and sequence analyses

Makoto Ikenaga; Susumu Asakawa; Yoshitetsu Muraoka; et al. Soil Science & Plant Nutrition 2003. doi:10.1080/00380768.2003.10410049

Other claims from this paper (16)

Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Pythium with Desulfovibrio reduced root dry weight to 20% of controls.

Taxon: Agrostis palustrisAgrostis stolonifera var. palustrist0
Treatment: combination of P. torulosum and D. desulfuricanse0
Interactor: P. torulosumPythium torulosume0pathogen
Second interactor: D. desulfuricansDesulfovibrio desulfuricanse0other
Outcome: roote0
Direction: decreasee0
Value: 20%e0
Comparator: controlse0

Verbatim

e0
“The combination of P. torulosum and D. desulfuricans, in the absence of black layer, induced the most severe decrease in root (20% of controls) and shoot (25% of controls) dry weights”
✓ located verbatim in the source · abstract, characters 557–740

t0
“Agrostis palustris”
✓ located verbatim in the source · title, characters 47–65

Title

Pathogenicity of Pythium torulosum to roots of Agrostis palustris in black-layered sand produced by the interaction of the cyanobacteria species Lyngbya, Phormidium, and Nostoc with Desulfovibrio desulfuricans

Clinton F. Hodges Canadian Journal of Botany 1992. doi:10.1139/b92-271

Other claims from this paper (8)

Intervention effect Pythium reduced root dry weight to 41% of controls.
Intervention effect Pythium reduced shoot dry weight to 35% of controls.
Intervention effect Pythium with Desulfovibrio reduced shoot dry weight to 25% of controls.
Intervention effect Pythium with cyanobacteria caused root damage equal to Pythium alone.
Intervention effect With cyanobacteria, Pythium caused less shoot dry weight loss than alone.
Intervention effect Under black layer, Pythium pathogenicity with cyanobacteria and Desulfovibrio was the same as Pythium alone or with cyanobacteria.
Intervention effect Under black layer, shoot dry weight with all three organisms did not differ from Pythium with cyanobacteria.
Intervention effect Cyanobacteria reduced root and shoot dry weight loss induced by Pythium and Desulfovibrio in black-layered sand.

Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Pythium with Desulfovibrio reduced shoot dry weight to 25% of controls.

Taxon: Agrostis palustrisAgrostis stolonifera var. palustrist0
Treatment: combination of P. torulosum and D. desulfuricanse0
Interactor: P. torulosumPythium torulosume0pathogen
Second interactor: D. desulfuricansDesulfovibrio desulfuricanse0other
Outcome: shoote0
Direction: decreasee0
Value: 25%e0
Comparator: controlse0

Verbatim

e0
“The combination of P. torulosum and D. desulfuricans, in the absence of black layer, induced the most severe decrease in root (20% of controls) and shoot (25% of controls) dry weights”
✓ located verbatim in the source · abstract, characters 557–740

t0
“Agrostis palustris”
✓ located verbatim in the source · title, characters 47–65

Title

Pathogenicity of Pythium torulosum to roots of Agrostis palustris in black-layered sand produced by the interaction of the cyanobacteria species Lyngbya, Phormidium, and Nostoc with Desulfovibrio desulfuricans

Clinton F. Hodges Canadian Journal of Botany 1992. doi:10.1139/b92-271

Other claims from this paper (8)

Intervention effect Pythium reduced root dry weight to 41% of controls.
Intervention effect Pythium reduced shoot dry weight to 35% of controls.
Intervention effect Pythium with Desulfovibrio reduced root dry weight to 20% of controls.
Intervention effect Pythium with cyanobacteria caused root damage equal to Pythium alone.
Intervention effect With cyanobacteria, Pythium caused less shoot dry weight loss than alone.
Intervention effect Under black layer, Pythium pathogenicity with cyanobacteria and Desulfovibrio was the same as Pythium alone or with cyanobacteria.
Intervention effect Under black layer, shoot dry weight with all three organisms did not differ from Pythium with cyanobacteria.
Intervention effect Cyanobacteria reduced root and shoot dry weight loss induced by Pythium and Desulfovibrio in black-layered sand.

Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

Under black layer, Pythium pathogenicity with cyanobacteria and Desulfovibrio was the same as Pythium alone or with cyanobacteria.

Taxon: Agrostis palustrisAgrostis stolonifera var. palustrist0
Treatment: combined with cyanobacteria and D. desulfuricanse0
Interactor: P. torulosumPythium torulosume0pathogen
Second interactor: D. desulfuricansDesulfovibrio desulfuricanse0other
Outcome: Pathogenicity of P. torulosum to rootse0
Direction: same ase0
Comparator: P. torulosum alone and in combination with cyanobacteriae0

Verbatim

e0
“Pathogenicity of P. torulosum to roots when combined with cyanobacteria and D. desulfuricans in the presence of black layer was the same as that with P. torulosum alone and in combination with cyanobacteria”
✓ located verbatim in the source · abstract, characters 980–1186

t0
“Agrostis palustris”
✓ located verbatim in the source · title, characters 47–65

Title

Pathogenicity of Pythium torulosum to roots of Agrostis palustris in black-layered sand produced by the interaction of the cyanobacteria species Lyngbya, Phormidium, and Nostoc with Desulfovibrio desulfuricans

Clinton F. Hodges Canadian Journal of Botany 1992. doi:10.1139/b92-271

Other claims from this paper (8)

Intervention effect Pythium reduced root dry weight to 41% of controls.
Intervention effect Pythium reduced shoot dry weight to 35% of controls.
Intervention effect Pythium with Desulfovibrio reduced root dry weight to 20% of controls.
Intervention effect Pythium with Desulfovibrio reduced shoot dry weight to 25% of controls.
Intervention effect Pythium with cyanobacteria caused root damage equal to Pythium alone.
Intervention effect With cyanobacteria, Pythium caused less shoot dry weight loss than alone.
Intervention effect Under black layer, shoot dry weight with all three organisms did not differ from Pythium with cyanobacteria.
Intervention effect Cyanobacteria reduced root and shoot dry weight loss induced by Pythium and Desulfovibrio in black-layered sand.

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Cyanobacteria reduced root and shoot dry weight loss induced by Pythium and Desulfovibrio in black-layered sand.

Taxon: Agrostis palustrisAgrostis stolonifera var. palustrist0
Treatment: presence of cyanobacteriae0
Interactor: P. torulosumPythium torulosume0pathogen
Second interactor: D. desulfuricansDesulfovibrio desulfuricanse0other
Outcome: root and shoot dry weight losse0
Direction: decreasede0

Not reportedComparator

Verbatim

e0
“The presence of cyanobacteria with P. torulosum and D. desulfuricans in black-layered sand decreased root and shoot dry weight loss induced by the two latter organisms”
✓ located verbatim in the source · abstract, characters 1275–1442

t0
“Agrostis palustris”
✓ located verbatim in the source · title, characters 47–65

Title

Pathogenicity of Pythium torulosum to roots of Agrostis palustris in black-layered sand produced by the interaction of the cyanobacteria species Lyngbya, Phormidium, and Nostoc with Desulfovibrio desulfuricans

Clinton F. Hodges Canadian Journal of Botany 1992. doi:10.1139/b92-271

Other claims from this paper (8)

Intervention effect Pythium reduced root dry weight to 41% of controls.
Intervention effect Pythium reduced shoot dry weight to 35% of controls.
Intervention effect Pythium with Desulfovibrio reduced root dry weight to 20% of controls.
Intervention effect Pythium with Desulfovibrio reduced shoot dry weight to 25% of controls.
Intervention effect Pythium with cyanobacteria caused root damage equal to Pythium alone.
Intervention effect With cyanobacteria, Pythium caused less shoot dry weight loss than alone.
Intervention effect Under black layer, Pythium pathogenicity with cyanobacteria and Desulfovibrio was the same as Pythium alone or with cyanobacteria.
Intervention effect Under black layer, shoot dry weight with all three organisms did not differ from Pythium with cyanobacteria.

Observationobservedoriginal resultmeasured

Claim · model-written summary

The isolated sulfate reducers were identified as Microspira desulfuricans.

Taxon: riceOryza sativat0
Interactor: Microspira desulfuricans (BEIJERINCK) van DELDENDesulfovibrio desulfuricanse0pathogen
Outcome: identical with Microspira desulfuricans (BEIJERINCK) van DELDENe0

Verbatim

e0
“Those bacteria are found to be identical with Microspira desulfuricans (BEIJERINCK) van DELDEN, and Pseudomonas sp. respectively which had been isolated by the writer from tidal paddy-fields”
✓ located verbatim in the source · abstract, characters 1003–1193

t0
“rice-seedlings”
✓ located verbatim in the source · title, characters 17–31

Title

On the injury of rice-seedlings caused by sulfate-reducing bacteria in common paddy-field

Hisayosi NOSE Japanese Journal of Phytopathology 1940. doi:10.3186/jjphytopath.10.192

Other claims from this paper (6)

Desulfovibrionaceae 11 claims

11 claims