By interacting organism › Bacteria › Acidobacteriaceae

Associationobservedoriginal resultmeasured

Claim · model-written summary

Discriminant genera correlated strongly with host genes for stress response, development and epigenetic regulation.

Taxon: Pseudostellaria heterophyllaPseudostellaria heterophyllae0
Interactor: GranulicellaGranulicellae1other
Second interactor: HarposporiumHarposporiume1other
Outcome: host genes involved in stress response, development, and epigenetic regulatione1

Not reportedDirection

Verbatim

e0
“medicinal plant Pseudostellaria heterophylla”
✓ located verbatim in the source · abstract, characters 381–425

e1
“Cross-omics network analysis revealed discriminant genera (e.g., Granulicella, Harposporium) that correlated strongly with host genes involved in stress response, development, and epigenetic regulation, with fungal taxa showing tighter associations with host expression than bacteria”
✓ located verbatim in the source · abstract, characters 1386–1669

Title

Acetoin and 2,3-Butanediol Differentially Restructure Fungal and Bacterial Communities and Their Links to Host Transcription in the Rhizosphere of a Medicinal Plant

Yingxi Yang; Chaoxiong Xu; Danhua Lin; et al. Biology 2026. doi:10.3390/biology15050403

Other claims from this paper (13)

Intervention effect Acetoin significantly reduced tuber number and biomass of Pseudostellaria heterophylla.
Intervention effect 2,3-butanediol significantly reduced tuber number and biomass of Pseudostellaria heterophylla.
Observation Bacterial communities remained taxonomically stable.
Intervention effect Bacterial communities showed only modest responses to VOCs.
Observation Bacterial communities showed clear shifts across developmental stages.
Observation Fungal communities underwent marked compositional restructuring.
Intervention effect Fungal communities were more sensitive to treatment, particularly under BD.
Observation Neutral community modeling indicated predominantly stochastic bacterial assembly.
Association Under BD, fungal assembly showed a stronger influence of deterministic processes.
Intervention effect BD associated with broader transcriptional reprogramming than AC.
Intervention effect BD was associated with downregulation of photosynthesis, specialized metabolism and defense pathways.
Association Fungal taxa showed tighter associations with host expression than bacteria.
Mechanism Microbial VOCs shape rhizosphere communities and host responses, a mechanistic framework the authors propose.

Observationobservedoriginal resultmeasured

Claim · model-written summary

Several persistent core rhizosphere taxa, including Granulicella, were maintained under severe Cd stress.

Taxon: Panax notoginseng (Burk.) F.H. ChenPanax notoginsengt0
Interactor: GranulicellaGranulicellae6other
Outcome: persistent core taxae6

Verbatim

t0
“Responses of Panax notoginseng (Burk.) F.H. Chen to cadmium stress”
✓ located verbatim in the source · title, characters 0–66

e6
“although several persistent core taxa (e.g., Granulicella ) were maintained”
✓ located verbatim in the source · abstract, characters 1165–1240

Title

Responses of Panax notoginseng (Burk.) F.H. Chen to cadmium stress: hormetic effects on growth, antioxidant systems, and rhizosphere microbial dynamics

Mulan Wang; Yuewen Huo; Yarui Zhao; et al. Frontiers in Microbiology 2026. doi:10.3389/fmicb.2026.1741415

Other claims from this paper (9)

Intervention effect Moderate Cd exposure (about 30 mg/kg soil) enhanced growth and antioxidant enzyme activities of Panax notoginseng.
Intervention effect High Cd (80 mg/kg soil or more) caused physiological inhibition of Panax notoginseng.
Intervention effect Microbial alpha diversity in the rhizosphere peaked under moderate Cd.
Intervention effect Microbial alpha diversity in the rhizosphere declined sharply under high Cd.
Observation Beta diversity differentiation of rhizosphere microbial communities was driven mainly by shifts in relative abundance rather than taxonomic turnover.
Intervention effect Severe Cd stress reduced rhizosphere microbial co-occurrence network connectivity.
Intervention effect Severe Cd stress increased negative correlations in the rhizosphere microbial network.
Observation Predicted functional potential of the rhizosphere microbiome indicated substantial functional redundancy.
Observation Key nutrient-cycling pathways were largely retained in the predicted functions despite network simplification under severe Cd.

Associationobservedoriginal resultmeasured

Claim · model-written summary

Bryocella associated clusters correlated positively with high C/N ratio and starch content.

Interactor: BryocellaBryocellae0other
Outcome: high C/N ratio and high starch contente0
Direction: positively correlatede0

Not reportedTaxon

Verbatim

e0
“Bryocella -associated) were positively correlated with a microenvironment characterized by a high C/N ratio and high starch content”
✓ located verbatim in the source · abstract, characters 1739–1870

Title

Connection between phyllosphere microbial composition and leaf stoichiometry of Phoebe bournei at upper and lower canopy positions

Yunlong Tian; Jingwen Wu; Zhaoquan Zhong; et al. Industrial Crops and Products 2026. doi:10.1016/j.indcrop.2026.122963

Other claims from this paper (9)

Observationobservedoriginal resultmeasured

Claim · model-written summary

The dysbiotic shift in the rhizosphere of managed citrus sites was characterized by enrichment with Acidobacterium, Nitrospira and Sphingomonas spp.

Taxon: Citrus PlantsCitrust0
Interactor: Acidobacterium, Nitrospira, and SphingomonasNitrospiraSphingomonasAcidobacteriume0other
Outcome: enrichment with Acidobacterium, Nitrospira, and Sphingomonas sppe0
Direction: enrichmente0

Verbatim

t0
“Citrus Plants”
✓ located verbatim in the source · title, characters 27–40

e0
“This dysbiotic shift was characterized by enrichment with Acidobacterium, Nitrospira, and Sphingomonas spp”
✓ located verbatim in the source · abstract, characters 1267–1373

Title

Rhizosphere Microbiomes of Citrus Plants in Historically Undisturbed 100-Year-Old Groves Appear to Mitigate Susceptibility to Citrus Greening Disease

Nwadiuto Esiobu; Karim Dawkins; Yasmine Sanhaji; et al. Microorganisms 2025. doi:10.3390/microorganisms13040763

Other claims from this paper (7)

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

F11 treatments reduced Ralstonia and Acidobacterium whereas streptomycin did not.

Taxon: tobaccoNicotiana tabacumt0
Treatment: F11 treatmentse0
Interactor: RalstoniaRalstoniae0pathogen
Second interactor: AcidobacteriumAcidobacteriume0pathogen
Outcome: key pathogens including Ralstonia and Acidobacteriume0
Direction: reducede0
Comparator: streptomycine0

Verbatim

e0
“F11 treatments (B and I) substantially reduced key pathogens including Ralstonia and Acidobacterium, a suppression not achieved by streptomycin”
✓ located verbatim in the source · abstract, characters 648–791

t0
“tobacco bacterial wilt”
✓ located verbatim in the source · title, characters 119–141

Title

Tempo-defined resilience: Early Bacillus amyloliquefaciens F11 application reshapes rhizosphere microbiome to suppress tobacco bacterial wilt

Ji Yang; Hainian Chen; Chaowen Li; et al. Biological Control 2025. doi:10.1016/j.biocontrol.2025.105954

Other claims from this paper (4)

Intervention effect Early F11 application suppressed tobacco bacterial wilt with 32% efficacy and outperformed diseased controls and streptomycin.
Observation F11 associated with rhizosphere community reorganization confirmed by beta diversity shifts.
Method / resource Comparative indicator taxa analysis identified eight microbial indicators.
Intervention effect F11 disrupted Ralstonia and Metallibacterium co occurrence.

Associationobservedoriginal resultpositivemeasured

Claim · model-written summary

Acidipila bacteria correlated positively with maize biomass.

Taxon: maizeZea mayse0
Interactor: AcidipilaAcidipilae0symbiont
Outcome: maize biomasse0
Direction: strongly positively correlatede0

Verbatim

e0
“key taxa such as Geodermatophilus, Lapillicoccus, and Acidipila bacteria strongly positively correlated with maize biomass”
✓ located verbatim in the source · abstract, characters 852–974

Title

Maize growth as a function of cover crop‐mediated soil microbiome

Shi, Sibo; Gong, Xin; Cheng, Saisai; et al. Universität Zürich, ZORA 2025. doi:10.5167/uzh-281024

Other claims from this paper (8)

Association Soil microbes explained up to 29% of variation in maize biomass.
Association Geodermatophilus bacteria correlated positively with maize biomass.
Association Lapillicoccus bacteria correlated positively with maize biomass.
Observation Microbe-biomass associations persisted after geographic, climatic, and soil adjustment.
Intervention effect Gramineae cover crops significantly reduced soil nitrogen availability.
Intervention effect Gramineae cover crops significantly reduced maize growth.
Intervention effect Legume cover crops reduced soil nitrogen availability.
Intervention effect Legume cover crops did not impair maize growth.

Associationobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Granulicella relative abundance was inversely related to moss root aluminum.

Taxon: mosse0
Interactor: GranulicellaGranulicellae0symbiont
Outcome: moss root aluminum contente0
Direction: inverselye0
Value: r = -0.74e0

Verbatim

e0
“moss phyllosphere Granulicella genus (r = -0.74, p = 0.014) is inversely related to the moss root aluminum content”
✓ located verbatim in the source · abstract, characters 900–1014

Title

Shading Reduces Root Aluminum Content andRestructures Epiphytic Microbial Communitieson the Subtropical Plateau of Southwest China

Lan Lu; Leilei Ding; Xiao Zhang; et al. Polish Journal of Environmental Studies 2025. doi:10.15244/pjoes/193907

Other claims from this paper (6)

Intervention effect One year of shading significantly reduced moss root aluminum content.
Intervention effect Five bacterial and nine fungal lineages were enriched on shaded moss phyllosphere.
Observation Nine bacterial and two fungal lineages were enriched in nonshaded phyllosphere.
Observation Sixteen bacterial and eight fungal lineages were enriched on shaded moss rhizoplane.
Observation Seventeen bacterial and fourteen fungal lineages were enriched on nonshaded moss rhizoplane.
Association Saitozyma relative abundance was positively related to moss root aluminum.

Associationobservedoriginal resultmeasured

Claim · model-written summary

T3 amino acid and nucleotide secretion correlated with Edaphobacter and Actinomadura abundance.

Material: T3e0
Interactor: EdaphobacterEdaphobactere0other
Second interactor: ActinomaduraActinomadurae0other
Outcome: abundance of Edaphobacter and Actinomadurae0

Not reportedTaxonDirection

Verbatim

e0
“T3 secreted high levels of amino acids and nucleotides with metabolic and defensive roles, correlating with the abundance of Edaphobacter and Actinomadura”
✓ located verbatim in the source · abstract, characters 1307–1461

t0
“watermelon”
✓ located verbatim in the source · title, characters 129–139

Title

Rootstock-specific bacterial microbiome and metabolome remodeling enhances glycine substitution efficacy for ammonium nitrate in watermelon

Zehao Chen; Tian Yao; Xingxing Bao; et al. Frontiers in Plant Science 2025. doi:10.3389/fpls.2025.1640174

Other claims from this paper (13)

Intervention effect Glycine raised bacterial alpha diversity to some extent relative to ammonium nitrate, without a significant difference.
Intervention effect Glycine altered bacterial beta diversity relative to ammonium nitrate.
Intervention effect Glycine enhanced microbial network complexity.
Association Rootstock genotype was the main driver of bacterial alpha diversity.
Association Rootstock genotype shaped bacterial network architecture.
Observation T1 rootstocks supported bacterial networks with strong associations enriched in two-component systems.
Observation T3 rootstock networks showed intensified resource competition.
Association Rootstock identity influenced root exudate profiles.
Observation T3 secreted high levels of amino acids and nucleotides.
Association T1 lipid secretion increased Acidibacter abundance.
Mechanism Rootstock, bacterial and metabolite interplay modulated soil enzyme activities.
Mechanism Rootstock, bacterial and metabolite interplay supported photochemical efficiency.
Mechanism Rootstock, bacterial and metabolite interplay promoted biomass accumulation.

Observationobservedoriginal resultmeasured

Claim · model-written summary

Edaphobacter, Haliangium and Streptomyces were highly abundant in the core microbiome.

Taxon: soybeanGlycine maxe2
Interactor: Edaphobacter , Haliangium , and StreptomycesStreptomycesHaliangiumEdaphobactere1other
Outcome: highly abundante1

Verbatim

e1
“in which Edaphobacter , Haliangium , and Streptomyces were highly abundant”
✓ located verbatim in the source · abstract, characters 1920–1994

e2
“cold stress significantly retarded soybean plants’ growth and biomass”
✓ located verbatim in the source · abstract, characters 833–902

Title

The silicon regulates microbiome diversity and plant defenses during cold stress in Glycine max L.

Waqar Ahmad; Lauryn Coffman; Aruna D Weerasooriya; et al. Frontiers in Plant Science 2024. doi:10.3389/fpls.2023.1280251

Other claims from this paper (9)

Observationobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Acidobacterium and Paludibaculum were most predominant in the T2 rhizosphere soil.

Taxon: Blueberryt0
Treatment: T2 treatmente0
Interactor: AcidobacteriumAcidobacteriume0symbiont
Second interactor: PaludibaculumPaludibaculume0symbiont
Outcome: most predominante0

Verbatim

e0
“Acidobacterium and Paludibaculum, belonging to the Acidobacteria phylum, exhibited the most significant influence and were most predominant in the T2 treatment rhizosphere soil.”
✓ located verbatim in the source · abstract, characters 810–987

t0
“Blueberry”
✓ located verbatim in the source · title, characters 74–83

Title

Comparative Study on the Effects of Different Soil Improvement Methods in Blueberry Soil

Yanan Li; Shuxia Liu; Dongmei Wang; et al. Agronomy 2024. doi:10.3390/agronomy14010125

Other claims from this paper (8)

Observation Peat with mushroom bran had the highest microbial diversity in rhizosphere and roots.
Observation Peat with acidified rice husk ranked second for microbial diversity.
Observation Proteobacteria and Actinobacteria were dominant in blueberry rhizosphere soil and roots.
Intervention effect T2 promoted nitrogen-fixing bacteria in rhizosphere soil and roots.
Intervention effect T2 enhanced nitrogen fixation in the blueberry rhizosphere.
Intervention effect T2 suppressed nitrate reduction reactions, denitrification, and nitrification in the blueberry rhizosphere.
Intervention effect T2 increased root endophytic microbes involved in nitrogen fixation.
Recommendation The authors identified peat combined with acidified rice husk as the optimal improvement for blueberry cultivation.

Acidobacteriaceae 19 claims

19 claims