By interacting organism › Bacteria › Bacteroidaceae

Observationobservedoriginal resultmeasured

Claim · model-written summary

Bacteroides persisted as a dominant endophytic core taxon across stages.

Taxon: Gastrodia elata BlumeGastrodia elatae0
Interactor: BacteroidesBacteroidese3symbiont
Outcome: Bacteroides in endophytic bacteriae3
Qualifier: dominating across stagese3

Verbatim

e0
“The Gastrodia elata Blume (GE) life cycle”
✓ located verbatim in the source · abstract, characters 0–41

e3
“Alpha diversity peaked at the flowering stage for endophytic bacteria (Shannon index) and at the bud formation stage for rhizosphere soil bacteria, with persistent core taxa (Bacteroides in endophytic bacteria, Pseudarthrobacter in rhizosphere soil bacteria) dominating across stages.”
✓ located verbatim in the source · abstract, characters 1091–1375

Title

Community Succession and Diversity Variation of Endophytic and Rhizosphere Soil Bacteria Across Gastrodia elata Seed Formation Stages

Kaize Shen; Mingjian Xu; Wei Zhou; et al. Biology 2026. doi:10.3390/biology15110829

Other claims from this paper (9)

Associationobservedoriginal resultmeasured

Claim · model-written summary

Relative abundance of Bacteroides decreased.

Taxon: PatchouliPogostemon cablint0
Interactor: BacteroidesBacteroidese0symbiont
Outcome: relative abundancee0
Direction: decreasede0

Not reportedTreatment

Verbatim

e0
“The relative abundance of Pseudomonas and Bacteroides decreased substantially from the phylum level”
✓ located verbatim in the source · abstract, characters 917–1016

t0
“Patchouli”
✓ located verbatim in the source · title, characters 23–32

Title

Continuous cropping of Patchouli alters soil physiochemical properties and rhizosphere microecology revealed by metagenomic sequencing

Guangtao Gu; Muhammad Zeeshan Ul Haq; Xue Sun; et al. Frontiers in Microbiology 2025. doi:10.3389/fmicb.2024.1482904

Other claims from this paper (15)

Association Continuous cropping reduced rhizosphere pH.
Association Continuous cropping reduced rhizosphere NH4+ -N.
Association S-PPO enzyme activity increased with cropping years.
Association S-NAG increased in the first two cropping years.
Association S-NAG decreased in the third cropping year.
Association Continuous cropping changed rhizosphere microbial diversity.
Association Continuous cropping changed rhizosphere microbial composition.
Association Relative abundance of Pseudomonas decreased.
Observation Zero-year cropping had 1798 specific microbial genera.
Observation First-year cropping had 172 specific microbial genera.
Observation Second-year cropping had 42 specific microbial genera.
Observation Third-year cropping had 44 specific microbial genera.
Association COG0823 abundance increased after continuous cropping.
Association NH4+ -N, S-CAT, S-LAP and SOC were main correlates of rhizosphere microbial communities.
Association pH, SOC and AK were key correlates of rhizosphere functional genes.

Associationobservedoriginal resultmeasured

Claim · model-written summary

Bacteroides was enriched in high-capsaicinoid fruits and positively correlated with capsaicinoid levels.

Taxon: peppert0
Organ / stage: fruitse0
Interactor: BacteroidesBacteroidese0symbiont
Outcome: capsaicinoid levelse0
Direction: positively correlatede0

Verbatim

e0
“Enterobacter, Bacteroides, and Escherichia_Shigella were enriched in high-capsaicinoid fruits and positively correlated with capsaicinoid levels, while Chujaibacter and Brochothrix dominated the low-capsaicinoid varieties.”
✓ located verbatim in the source · abstract, characters 672–894

t0
“Pepper Varieties”
✓ located verbatim in the source · title, characters 55–71

Title

The Changes of the Endophytic Bacterial Community from Pepper Varieties with Different Capsaicinoids

Yuxiang Peng; Xiulan He; Yu Tao; et al. Microorganisms 2025. doi:10.3390/microorganisms13030596

Other claims from this paper (9)

Associationobservedoriginal resultmeasured

Claim · model-written summary

Soil Cd availability was negatively correlated with the relative abundance of several soil bacterial genera.

Taxon: Diospyros lotusDiospyros lotust0
Interactor: BacteroidesBacteroidese6other
Second interactor: CellvibrioCellvibrioe6other
Outcome: Soil Cd availabilitye6
Direction: negatively correlatede6
Qualifier: Bacteroides, Cellvibrio, Bacillus, Sphingomonas, Vicinamibacteraceae, and Faecalibacteriume6

Verbatim

e6
“Soil Cd availability was negatively correlated with the relative abundance of Bacteroides, Cellvibrio, Bacillus, Sphingomonas, Vicinamibacteraceae, and Faecalibacterium”
✓ located verbatim in the source · abstract, characters 1106–1274

t0
“Diospyros lotus L.”
✓ located verbatim in the source · title, characters 121–139

Title

Organic matter and Bacillus niescheri amendments mitigate cadmium toxicity by regulating physiology and transcription of Diospyros lotus L., and soil bio-chemical properties

Dongmei Lang; Yi Hu; Wenhao Zhang; et al. Environmental Technology & Innovation 2024. doi:10.1016/j.eti.2024.103527

Other claims from this paper (9)

Observationobservedoriginal resultmeasured

Claim · model-written summary

Bacteroides predominated in most samples at 31–72% of identified bacteria.

Taxon: C. lepidotaCola lepidotae1
Interactor: BacteroidesBacteroidese0other
Outcome: abundance of Bacteroidese0
Value: 31–72%e0

Verbatim

e0
“The abundance of Bacteroides, which was the predominant genus in the majority of the samples, was between 31–72% among the total bacteria identified in most samples.”
✓ located verbatim in the source · abstract, characters 865–1030

e1
“C. lepidota”
✓ located verbatim in the source · abstract, characters 1118–1129

Title

Deciphering bacterial community structure in Cola lepidota (K.) Schum fruits using Illumina next-generation sequencing

J.O. Tariah; A.E. Ataga; N.G. Ogbuji Scientific African 2024. doi:10.1016/j.sciaf.2024.e02148

Other claims from this paper (9)

Associationobservedoriginal resultmeasured

Claim · model-written summary

Bacteroides, Ruminnococcus-torques-group, Lachnoclostridium and Escherichia-Shigella were negatively correlated with over four anthocyanins.

Taxon: blueberriest0
Interactor: BacteroidesBacteroidese0other
Second interactor: Ruminnococcus-torques-groupe0other
Outcome: over four anthocyaninse0
Direction: negatively correlatede0
Qualifier: Lachnoclostridium and Escherichia-Shigellae0

Verbatim

t0
“blueberries”
✓ located verbatim in the source · title, characters 63–74

e0
“Bacteroides, Ruminnococcus-torques-group, Lachnoclostridium and Escherichia-Shigella were negatively correlated with over four anthocyanins”
✓ located verbatim in the source · abstract, characters 1003–1142

Title

Microbiota characterization of atmospheric cold plasma treated blueberries

Hao Sun; Yaoke Duan; Huandong Li; et al. LWT 2023. doi:10.1016/j.lwt.2023.114720

Other claims from this paper (7)

Intervention effect ACP-induced microbiota inactivation on blueberries was not selective at the phylum level.
Intervention effect ACP treatment increased the proportion of Bacteroides and Faecalibacterium at the genus level in the blueberry microbiota.
Observation MND1, Curtobacterium, Blastococcus and Owenweeksia can function as biomarkers of ACP-mediated sterilization.
Observation The microbiota surviving ACP treatment were less pathogenic and more sensitive to environmental stresses.
Intervention effect Blueberry anthocyanin concentration was slightly affected by the 10-min ACP treatment.
Intervention effect Blueberry anthocyanin concentration decreased after the 20-min ACP treatment.
Association Alternaria was positively correlated with all anthocyanins in the blueberries.

Observationobservedoriginal resultmeasured

Claim · model-written summary

Bacteroid area, amount and volutin area and amount increased in bean plants.

Taxon: beane0
Interactor: bacteroidesBacteroidese2symbiont
Outcome: bacteroides area, amount and area of volutine2
Direction: increasee2

Verbatim

e0
“the bean plant varieties Geliada and Shokoladnitsa was studied under field conditions”
✓ located verbatim in the source · abstract, characters 138–223

e2
“against the increase of bacteroides area, amount and area of volutin and decrease of area and amount of poly-ß-oxybutyric acid (POM)”
✓ located verbatim in the source · abstract, characters 328–460

Title

Legume plant yields using biopreparation and plant growth regulators

O G Volobueva IOP Conference Series Earth and Environmental Science 2023. doi:10.1088/1755-1315/1206/1/012027

Other claims from this paper (6)

Intervention effect Treating bean seeds with Epin-Extra increased nitrogenase activity in Heliada plants.
Observation Area and amount of poly-ß-oxybutyric acid (POM) decreased in bean plants.
Intervention effect The protective effect of Rizotorfin was evident in the variety Shokoladnitsa.
Association Symbiotic nitrogen fixation was related to the yield of Heliada and Shokoladnitsa bean plants.
Observation Bean varieties responded differently to Risotorfin and growth regulators.
Recommendation Pre-sowing seed treatment with a nodule-bacteria biopreparation and growth regulators is recommended.

Observationobservedoriginal resultmeasured

Claim · model-written summary

Four bacterial genera were identified as candidates related to intercropping advantages.

Taxon: D. odoriferaDalbergia odoriferat0
Interactor: BacteroidesBacteroidese0symbiont
Second interactor: Coxiellae0symbiont
Outcome: four bacterial generae0
Qualifier: Pseudomonas, SJA-15e0

Verbatim

e0
“four bacterial genera (Bacteroides, Coxiella, Pseudomonas, SJA-15)”
✓ located verbatim in the source · abstract, characters 2031–2097

t0
“Taking the introduction of Dalbergia odorifera (D. odorifera)”
✓ located verbatim in the source · abstract, characters 457–518

Title

Legume-bacteria-soil interaction networks linked to improved plant productivity and soil fertility in intercropping systems

Yahui Lan; Han Zhang; Yaqin He; et al. Industrial Crops and Products 2023. doi:10.1016/j.indcrop.2023.116504

Other claims from this paper (8)

Intervention effect Intercropping increased Dalbergia total biomass by 5.90–56.29%.
Intervention effect Intercropping with 6 g N pot−1 promoted gibberellin content.
Intervention effect Intercropping with 6 g N pot−1 promoted glutamine synthetase and nitrogenase activities.
Intervention effect Intercropping with 6 g N pot−1 promoted soil fertility and bacterial diversity.
Intervention effect Intercropping with moderate fertilization promoted bacteria with aerobic chemoheterotrophy, nitrogen fixation and respiration potential.
Observation Differentially expressed genes mainly involved metabolic pathways, signal transduction and the tricarboxylic acid cycle.
Observation Acidic endo chitinase and Na+/K+ transporter were identified as candidate genes related to intercropping advantages.
Intervention effect Moderate fertilization of eucalyptus and Dalbergia intercropping created a more stable network with additional module hubs.

Observationobservedoriginal resultmeasured

Claim · model-written summary

Bacteroides, Muribaculaceae, and Nesterenkonia were main endophytic bacteria throughout storage.

Taxon: Pear FruitPyrus communist0
Interactor: BacteroidesBacteroidese0other
Second interactor: MuribaculaceaeMuribaculaceaee0other
Outcome: main endophytic bacteriae0
Qualifier: Nesterenkoniae0

Verbatim

e0
“Bacteroides, Muribaculaceae, and Nesterenkonia were the main endophytic bacteria throughout storage.”
✓ located verbatim in the source · abstract, characters 957–1057

t0
“Pear Fruit”
✓ located verbatim in the source · title, characters 95–105

Title

The Microbial Diversity in Relation to Postharvest Quality and Decay: Organic vs. Conventional Pear Fruit

Qi Gao; Yang Zhang; Congcong Gao; et al. Foods 2023. doi:10.3390/foods12101980

Other claims from this paper (13)

Associationobservedoriginal resultmeasured

Claim · model-written summary

Akkermansia and Bacteroides increased at 4 weeks after inoculation in resistant lines.

Taxon: sugar beetBeta vulgaris subsp. vulgarist0
Material: R linese0
Interactor: AkkermansiaAkkermansiae0othert1
Second interactor: BacteroidesBacteroidese0othert1
Outcome: Akkermansia and Bacteroidese0
Direction: increasede0

Verbatim

e0
“The bacterial genera Brevibacillus increased at 6 dpi, and Akkermansia and Bacteroides at 4 wkpi in the R lines”
✓ located verbatim in the source · abstract, characters 744–855

t0
“sugar beet”
✓ located after whitespace/quote normalisation · title, characters 19–29

t1
“sugar beet”
✓ located after whitespace/quote normalisation · title, characters 19–29

Title

Leaf Bacteriome in Sugar Beet Shows Differential Response against Beet curly top virus during Resistant and Susceptible Interactions

Rajtilak Majumdar; Carl A. Strausbaugh; Eric D. Vincill; et al. International Journal of Molecular Sciences 2022. doi:10.3390/ijms23158073

Other claims from this paper (11)

Bacteroidaceae 18 claims

18 claims