Claim · model-written summary
Annotation identified 34,615 predominantly protein-coding genes.
- Taxon
- Apopellia endiviifolia
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Apopellia endiviifoliae0 - Outcome
- genese1
- Value
- 34,615 genese1
Not reportedMaterialGeneCompoundOrgan / stageInteractorInteractor roleSecond interactorSecond interactor roleTreatmentComparatorSettingDirectionQualifier
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
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Verbatim
e0“Apopellia endiviifolia”
e1“RNA sequencing-based annotation identified 34,615 genes, predominantly protein coding”
Title
Joanna Szablińska-Piernik; Paweł Sulima; Jakub Sawicki GigaScience 2025. doi:10.1093/gigascience/giaf145
Other claims from this paper (11)
- Method / resource A haploid A. endiviifolia genome assembly was produced at 2,914,960,273 bp with N50 468,157,909 bp.
- Method / resource The assembly had 99.2% BUSCO completeness and quality value 47.6.
- Observation The assembly comprised nine chromosomes, 18 telomeres and nine centromeres.
- Observation Long terminal repeat elements comprised 12.16% of transposable elements.
- Observation The transposable elements included 57 Helitrons.
- Observation Copia elements comprised 8.94% of the genome.
- Observation Gypsy elements comprised 2.95% of the genome.
- Observation Ty3/Gypsy was significantly enriched in centromeric regions.
- Observation Average GC content ranged from 38.8% to 39.6%.
- Observation Gene density ranged from 5.52 to 9.78 genes per 500 kbp.
- Observation Synteny analysis indicated extensive rearrangements among related liverworts.