Claim · model-written summary
The S segment of the new TSWV strains showed 90-98% nucleotide identity with reported isolates.
- Taxon
- TSWV
Orthotospovirus tomatomaculaee1 - Outcome
- nucleotide identitye2
- Value
- 90–98% (S)e0
- Comparator
- reported isolatese2
Not reportedMaterialGeneCompoundOrgan / stageInteractorInteractor roleSecond interactorSecond interactor roleTreatmentSettingDirectionQualifier
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e0“90–98% (S)”
e2“nucleotide identity with reported isolates”
e1“Tomato spotted wilt virus (TSWV)”
Title
Senthilraja Chinnaiah; Vamsidhar Reddy Netla; Arinder K. Arora; et al. BMC Genomics 2026. doi:10.1186/s12864-026-12682-2
Other claims from this paper (15)
- Intervention effect Tomato resistance-breaking TSWV strains triggered a hypersensitive response in resistant pepper.
- Intervention effect Tomato resistance-breaking TSWV strains did not trigger a hypersensitive response in resistant tomato.
- Observation The pepper isolate Pep-BL uniquely overcame both Sw-5b and Tsw resistance.
- Observation Pep-BL caused earlier and more severe symptoms in resistant pepper (12 DPI) than in resistant tomato (22 DPI).
- Observation Pep-BL accumulated to higher titers in resistant tomato than other resistance-breaking strains.
- Observation The L segment of the new TSWV strains showed 93-98% nucleotide identity with reported isolates.
- Observation The M segment of the new TSWV strains showed 90-98.5% nucleotide identity with reported isolates.
- Observation Phylogenetic analyses showed that the TSWV strains clustered by geography.
- Observation Tom-CA grouped distinctly with a Mexican resistance-breaking isolate.
- Observation Pep-BL clustered with Pep-Non-RB.
- Observation No reassortment was detected among the TSWV strains.
- Observation Recombination was observed in Tom-CA, Tom-BL1 and Pep-BL.
- Observation Population genetics revealed low nucleotide diversity and evidence of purifying selection in the TSWV strains.
- Observation Codon-level analyses identified novel NSm substitutions C118F and K125R that may contribute to resistance-breaking phenotypes.
- Observation Codon-level analyses identified a novel NSs substitution Y462H that may contribute to resistance-breaking phenotypes.