Claim · model-written summary
Of the predicted genes, 6,973 are supported by RNA-seq.
- Taxon
- T. horrida
Tilletia horridae0 - Outcome
- genes supported by RNA-seqe0
- Value
- 6,973e0
Not reportedMaterialGeneCompoundOrgan / stageInteractorInteractor roleSecond interactorSecond interactor roleTreatmentComparatorSettingDirectionQualifier
Organisms pictured · Representative pictures of the matched species, not figures from the paper.
Verbatim
e0“genome sequence of T. horrida; it is composed of 23.2 Mb that encode 7,729 predicted genes and 6,973 genes supported by RNA-seq”
Title
The pathogenic mechanisms of Tilletia horrida as revealed by comparative and functional genomics
Aijun Wang; Linxiu Pang; Na Wang; et al. Scientific Reports 2018. doi:10.1038/s41598-018-33752-w
Other claims from this paper (9)
- Method / resource The T. horrida genome sequence is 23.2 Mb.
- Method / resource The T. horrida genome encodes 7,729 predicted genes.
- Observation Repetitive elements account for 8.45% of the T. horrida genome.
- Observation T. horrida lies evolutionarily close to the Ustilago fungi.
- Observation No co-linearity was observed between T. horrida and the barley smut Ustilago hordei.
- Observation T. horrida possesses a smaller set of carbohydrate-active enzymes and secondary metabolites.
- Observation Genes encoding secreted proteins and secondary metabolism enzymes, and PHI-database genes, are highly expressed during early infection.
- Observation The authors identified 131 candidate pathogen effectors based on expression patterns and functionality.
- Observation Two of the candidate effectors were validated as triggering leaf cell death in Nicotiana benthamiana.