Paper · 2008 · Microbes and Environments

Expressed nifH Genes of Endophytic Bacteria Detected in Field-Grown Sweet Potatoes (Ipomoea batatas L.)

Junko Terakado-Tonooka; Yoshinari Ohwaki; Hiromoto Yamakawa; et al.

6
claims
9
verbatim quotes
74
citations
3
research areas
✓
Open access

Abstract

We examined the nitrogenase reductase (nifH) genes of endophytic diazotrophic bacteria expressed in field-grown sweet potatoes (Ipomoea batatas L.) by reverse transcription (RT)-PCR. Gene fragments corresponding to nifH were amplified from mRNA obtained from the stems and storage roots of field-grown sweet potatoes several months after planting. Sequence analysis revealed that these clones were homologous to the nifH sequences of Bradyrhizobium, Pelomonas, and Bacillus sp. in the DNA database. Investigation of the nifH genes amplified from the genomic DNA extracted from these sweet potatoes also showed high similarity to various α-proteobacteria including Bradyrhizobium, β-proteobacteria, and cyanobacteria. These results suggest that bradyrhizobia colonize and express nifH genes not only in the root nodules of leguminous plants but also in sweet potatoes as diazotrophic endophytes.

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Claims 6

Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

nifH gene fragments were amplified from sweet potato stem and storage-root mRNA.

Taxon
sweet potatoesIpomoea batatase0
Organ / stage
stems and storage rootse0
Gene
nifHe0
Outcome
Gene fragments corresponding to nifH were amplifiede0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Ipomoea batatas
Ipomoea batatas · TaxonEarth100 · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Gene fragments corresponding to nifH were amplified from mRNA obtained from the stems and storage roots of field-grown sweet potatoes several months after planting.”

✓ located verbatim in the source · abstract, characters 183–347 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Expressed clones were homologous to Bradyrhizobium nifH sequences.

Taxon
Sweet PotatoesIpomoea batatast0
Interactor
BradyrhizobiumBradyrhizobiume0symbiont
Gene
nifHe0
Outcome
homologous to the nifH sequencese0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Ipomoea batatas
Ipomoea batatas · TaxonEarth100 · CC BY-SA 3.0 · Wikimedia Commons ↗
Bradyrhizobium
Bradyrhizobium · Interactor · picture of the genus (one of its species)Louisa Howard - Dartmouth Electron Microscope Facility · Public domain · Wikimedia Commons ↗

Verbatim

t0

“Sweet Potatoes”

✓ located verbatim in the source · title, characters 68–82 · show in text ↑
e0

“these clones were homologous to the nifH sequences of Bradyrhizobium, Pelomonas, and Bacillus sp. in the DNA database”

✓ located verbatim in the source · abstract, characters 380–497 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Expressed clones were homologous to Pelomonas nifH sequences.

Taxon
Sweet PotatoesIpomoea batatast0
Interactor
PelomonasRoseatelese0symbiont
Gene
nifHe0
Outcome
homologous to the nifH sequencese0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Ipomoea batatas
Ipomoea batatas · TaxonEarth100 · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“Sweet Potatoes”

✓ located verbatim in the source · title, characters 68–82 · show in text ↑
e0

“these clones were homologous to the nifH sequences of Bradyrhizobium, Pelomonas, and Bacillus sp. in the DNA database”

✓ located verbatim in the source · abstract, characters 380–497 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Expressed clones were homologous to Bacillus sp. nifH sequences.

Taxon
Sweet PotatoesIpomoea batatast0
Interactor
Bacillus sp.e0symbiont
Gene
nifHe0
Outcome
homologous to the nifH sequencese0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Ipomoea batatas
Ipomoea batatas · TaxonEarth100 · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“Sweet Potatoes”

✓ located verbatim in the source · title, characters 68–82 · show in text ↑
e0

“these clones were homologous to the nifH sequences of Bradyrhizobium, Pelomonas, and Bacillus sp. in the DNA database”

✓ located verbatim in the source · abstract, characters 380–497 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Genomic nifH amplicons showed high similarity to diverse bacterial sequences.

Taxon
sweet potatoesIpomoea batatase0
Gene
nifHe0
Outcome
high similarity to various α-proteobacteria including Bradyrhizobium, β-proteobacteria, and cyanobacteriae0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Ipomoea batatas
Ipomoea batatas · TaxonEarth100 · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“nifH genes amplified from the genomic DNA extracted from these sweet potatoes also showed high similarity to various α-proteobacteria including Bradyrhizobium, β-proteobacteria, and cyanobacteria”

✓ located verbatim in the source · abstract, characters 520–715 · show in text ↑
Mechanismauthor interpretationoriginal resultpositivemeasured

Claim · model-written summary

Bradyrhizobia may colonize sweet potatoes and express nifH as endophytes.

Taxon
sweet potatoesIpomoea batatase0
Interactor
bradyrhizobiae0symbiont
Gene
nifHe0
Outcome
colonize and express nifH genese0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Ipomoea batatas
Ipomoea batatas · TaxonEarth100 · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“bradyrhizobia colonize and express nifH genes not only in the root nodules of leguminous plants but also in sweet potatoes as diazotrophic endophytes”

✓ located verbatim in the source · abstract, characters 744–893 · show in text ↑