Paper · 2008 · Molecular Plant-Microbe Interactions

A Versatile Assay for the Identification of RNA Silencing Suppressors Based on Complementation of Viral Movement

Jason G. Powers; Tim L. Sit; Feng Qu; et al.

4
claims
8
verbatim quotes
48
citations
2
research areas
✓
Open access

Abstract

The cell-to-cell movement of Turnip crinkle virus (TCV) in Nicotiana benthamiana requires the presence of its coat protein (CP), a known suppressor of RNA silencing. RNA transcripts of a TCV construct containing a reporter gene (green fluorescent protein) (TCV-sGFP) in place of the CP open reading frame generated foci of three to five cells. TCV CP delivered in trans by Agrobacterium tumefaciens infiltration potentiated movement of TCV-sGFP and increased foci diameter, on average, by a factor of four. Deletion of the TCV movement proteins in TCV-sGFP (construct TCVDelta92-sGFP) abolished the movement complementation ability of TCV CP. Other known suppressors of RNA silencing from a wide spectrum of viruses also complemented the movement of TCV-sGFP when delivered in trans by Agrobacterium tumefaciens. These include suppressors from nonplant viruses with no known plant movement function, demonstrating that this assay is based solely on RNA silencing suppression. While the TCV-sGFP construct is primarily used as an infectious RNA transcript, it was also subcloned for direct expression from Agrobacterium tumefaciens for simple quantification of suppressor activity based on fluorescence levels in whole leaves. Thus, this system provides the flexibility to assay for suppressor activity in either the cytoplasm or nucleus, depending on the construct employed.

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Claims 4

Method / resourceobservedoriginal resultpositivemeasured

Claim · model-written summary

TCV coat protein delivered in trans increased TCV-sGFP foci diameter by a factor of four in Nicotiana benthamiana.

Taxon
Nicotiana benthamianaNicotiana benthamianae0
Treatment
TCV CP delivered in transe1
Interactor
Turnip crinkle virusTurnip crinkle viruse0pathogen
Outcome
foci diametere1
Direction
increasede1
Value
a factor of foure1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana benthamiana
Nicotiana benthamiana · TaxonCharles Andres · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“The cell-to-cell movement of Turnip crinkle virus (TCV) in Nicotiana benthamiana requires the presence of its coat protein (CP)”

✓ located verbatim in the source · abstract, characters 0–127 · show in text ↑
e1

“TCV CP delivered in trans by Agrobacterium tumefaciens infiltration potentiated movement of TCV-sGFP and increased foci diameter, on average, by a factor of four”

✓ located verbatim in the source · abstract, characters 344–505 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

TCV coat protein delivered in trans potentiated cell-to-cell movement of TCV-sGFP in Nicotiana benthamiana.

Taxon
Nicotiana benthamianaNicotiana benthamianae0
Treatment
TCV CP delivered in transe1
Outcome
movement of TCV-sGFPe1
Direction
potentiatede1

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana benthamiana
Nicotiana benthamiana · TaxonCharles Andres · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“The cell-to-cell movement of Turnip crinkle virus (TCV) in Nicotiana benthamiana requires the presence of its coat protein (CP)”

✓ located verbatim in the source · abstract, characters 0–127 · show in text ↑
e1

“TCV CP delivered in trans by Agrobacterium tumefaciens infiltration potentiated movement of TCV-sGFP and increased foci diameter, on average, by a factor of four”

✓ located verbatim in the source · abstract, characters 344–505 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Deleting the TCV movement proteins abolished the movement complementation ability of TCV coat protein.

Taxon
Nicotiana benthamianaNicotiana benthamianae0
Treatment
Deletion of the TCV movement proteinse2
Outcome
movement complementation ability of TCV CPe2
Direction
abolishede2

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana benthamiana
Nicotiana benthamiana · TaxonCharles Andres · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“The cell-to-cell movement of Turnip crinkle virus (TCV) in Nicotiana benthamiana requires the presence of its coat protein (CP)”

✓ located verbatim in the source · abstract, characters 0–127 · show in text ↑
e2

“Deletion of the TCV movement proteins in TCV-sGFP (construct TCVDelta92-sGFP) abolished the movement complementation ability of TCV CP”

✓ located verbatim in the source · abstract, characters 507–641 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Other known RNA silencing suppressors from a wide range of viruses also complemented TCV-sGFP movement when delivered in trans.

Taxon
Nicotiana benthamianaNicotiana benthamianae0
Treatment
Other known suppressors of RNA silencinge3
Outcome
movement of TCV-sGFPe3
Direction
complementede3

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana benthamiana
Nicotiana benthamiana · TaxonCharles Andres · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“The cell-to-cell movement of Turnip crinkle virus (TCV) in Nicotiana benthamiana requires the presence of its coat protein (CP)”

✓ located verbatim in the source · abstract, characters 0–127 · show in text ↑
e3

“Other known suppressors of RNA silencing from a wide spectrum of viruses also complemented the movement of TCV-sGFP when delivered in trans by Agrobacterium tumefaciens”

✓ located verbatim in the source · abstract, characters 643–811 · show in text ↑

Brassica rapa subsp. rapa · quality: protein · Nicotiana benthamianaPositive and negative results

2 papers: 1 positive, 1 negative or no effect

1 in the opposite direction

  1. positive
See all 2 papers →

loss of function · quality: protein · Nicotiana benthamianaPositive and negative results

14 papers: 4 positive, 10 negative or no effect

9 papers in the same direction as this paper · 4 in the opposite direction

  1. positive
  2. positive
  3. positive

10 papers more in this group

See all 14 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.