Paper · 2012 · PLoS ONE

Transcriptional and Metabolic Insights into the Differential Physiological Responses of Arabidopsis to Optimal and Supraoptimal Atmospheric CO2

Fatma Kaplan; Wei Zhao; Jeffrey T. Richards; et al.

8
claims
20
verbatim quotes
64
citations
2
research areas
✓
Open access · cc-by

Abstract

BACKGROUND: In tightly closed human habitats such as space stations, locations near volcano vents and closed culture vessels, atmospheric CO(2) concentration may be 10 to 20 times greater than Earth's current ambient levels. It is known that super-elevated (SE) CO(2) (>1,200 µmol mol(-1)) induces physiological responses different from that of moderately elevated CO(2) (up to 1,200 µmol mol(-1)), but little is known about the molecular responses of plants to supra-optimal [CO(2)]. METHODOLOGY/PRINCIPAL FINDINGS: To understand the underlying molecular causes for differential physiological responses, metabolite and transcript profiles were analyzed in aerial tissue of Arabidopsis plants, which were grown under ambient atmospheric CO(2) (400 µmol mol(-1)), elevated CO(2) (1,200 µmol mol(-1)) and SE CO(2) (4,000 µmol mol(-1)), at two developmental stages early and late vegetative stage. Transcript and metabolite profiling revealed very different responses to elevated versus SE [CO(2)]. The transcript profiles of SE CO(2) treated plants were closer to that of the control. Development stage had a clear effect on plant molecular response to elevated and SE [CO(2)]. Photosynthetic acclimation in terms of down-regulation of photosynthetic gene expression was observed in response to elevated [CO(2)], but not that of SE [CO(2)] providing the first molecular evidence that there appears to be a fundamental disparity in the way plants respond to elevated and SE [CO(2)]. Although starch accumulation was induced by both elevated and SE [CO(2)], the increase was less at the late vegetative stage and accompanied by higher soluble sugar content suggesting an increased starch breakdown to meet sink strength resulting from the rapid growth demand. Furthermore, many of the elevated and SE CO(2)-responsive genes found in the present study are also regulated by plant hormone and stress. CONCLUSIONS/SIGNIFICANCE: This study provides new insights into plant acclimation to elevated and SE [CO(2)] during development and how this relates to stress, sugar and hormone signaling.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

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Claims 8

Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Elevated CO2 (1,200 µmol mol(-1)) down-regulated photosynthetic gene expression in Arabidopsis compared with ambient CO2 (400 µmol mol(-1)).

Taxon
ArabidopsisArabidopsist0
Treatment
elevated [CO(2)]e3
Outcome
down-regulation of photosynthetic gene expressione3
Direction
down-regulatione3
Comparator
ambient atmospheric CO(2) (400 µmol mol(-1))e1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“Differential Physiological Responses of Arabidopsis to Optimal and Supraoptimal Atmospheric CO2”

✓ located verbatim in the source · title, characters 48–143 · show in text ↑
e1

“metabolite and transcript profiles were analyzed in aerial tissue of Arabidopsis plants, which were grown under ambient atmospheric CO(2) (400 µmol mol(-1)), elevated CO(2) (1,200 µmol mol(-1)) and SE CO(2) (4,000 µmol mol(-1)), at two developmental stages early and late vegetative stage”

✓ located verbatim in the source · abstract, characters 605–893 · show in text ↑
e3

“Photosynthetic acclimation in terms of down-regulation of photosynthetic gene expression was observed in response to elevated [CO(2)], but not that of SE [CO(2)]”

✓ located verbatim in the source · abstract, characters 1176–1337 · show in text ↑
Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

Supraoptimal CO2 (4,000 µmol mol(-1)) did not induce the down-regulation of photosynthetic gene expression seen under elevated CO2 in Arabidopsis.

Taxon
ArabidopsisArabidopsist0
Treatment
SE [CO(2)]e3
Outcome
down-regulation of photosynthetic gene expressione3
Direction
no_changeinferrede3
Comparator
ambient atmospheric CO(2) (400 µmol mol(-1))e1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“Differential Physiological Responses of Arabidopsis to Optimal and Supraoptimal Atmospheric CO2”

✓ located verbatim in the source · title, characters 48–143 · show in text ↑
e1

“metabolite and transcript profiles were analyzed in aerial tissue of Arabidopsis plants, which were grown under ambient atmospheric CO(2) (400 µmol mol(-1)), elevated CO(2) (1,200 µmol mol(-1)) and SE CO(2) (4,000 µmol mol(-1)), at two developmental stages early and late vegetative stage”

✓ located verbatim in the source · abstract, characters 605–893 · show in text ↑
e3

“Photosynthetic acclimation in terms of down-regulation of photosynthetic gene expression was observed in response to elevated [CO(2)], but not that of SE [CO(2)]”

✓ located verbatim in the source · abstract, characters 1176–1337 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Elevated CO2 induced starch accumulation in Arabidopsis compared with ambient CO2.

Taxon
ArabidopsisArabidopsist0
Treatment
elevatede4
Outcome
starch accumulatione4
Direction
inducede4
Comparator
ambient atmospheric CO(2) (400 µmol mol(-1))e1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“Differential Physiological Responses of Arabidopsis to Optimal and Supraoptimal Atmospheric CO2”

✓ located verbatim in the source · title, characters 48–143 · show in text ↑
e1

“metabolite and transcript profiles were analyzed in aerial tissue of Arabidopsis plants, which were grown under ambient atmospheric CO(2) (400 µmol mol(-1)), elevated CO(2) (1,200 µmol mol(-1)) and SE CO(2) (4,000 µmol mol(-1)), at two developmental stages early and late vegetative stage”

✓ located verbatim in the source · abstract, characters 605–893 · show in text ↑
e4

“Although starch accumulation was induced by both elevated and SE [CO(2)], the increase was less at the late vegetative stage and accompanied by higher soluble sugar content”

✓ located verbatim in the source · abstract, characters 1480–1652 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Supraoptimal CO2 induced starch accumulation in Arabidopsis compared with ambient CO2.

Taxon
ArabidopsisArabidopsist0
Treatment
SE [CO(2)]e4
Outcome
starch accumulatione4
Direction
inducede4
Comparator
ambient atmospheric CO(2) (400 µmol mol(-1))e1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“Differential Physiological Responses of Arabidopsis to Optimal and Supraoptimal Atmospheric CO2”

✓ located verbatim in the source · title, characters 48–143 · show in text ↑
e1

“metabolite and transcript profiles were analyzed in aerial tissue of Arabidopsis plants, which were grown under ambient atmospheric CO(2) (400 µmol mol(-1)), elevated CO(2) (1,200 µmol mol(-1)) and SE CO(2) (4,000 µmol mol(-1)), at two developmental stages early and late vegetative stage”

✓ located verbatim in the source · abstract, characters 605–893 · show in text ↑
e4

“Although starch accumulation was induced by both elevated and SE [CO(2)], the increase was less at the late vegetative stage and accompanied by higher soluble sugar content”

✓ located verbatim in the source · abstract, characters 1480–1652 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

The increase in starch accumulation was smaller at the late vegetative stage than at the early stage in Arabidopsis under elevated and supraoptimal CO2.

Taxon
ArabidopsisArabidopsist0
Organ / stage
late vegetative stagee4
Outcome
starch accumulatione4
Direction
lesse4

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“Differential Physiological Responses of Arabidopsis to Optimal and Supraoptimal Atmospheric CO2”

✓ located verbatim in the source · title, characters 48–143 · show in text ↑
e4

“Although starch accumulation was induced by both elevated and SE [CO(2)], the increase was less at the late vegetative stage and accompanied by higher soluble sugar content”

✓ located verbatim in the source · abstract, characters 1480–1652 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Soluble sugar content was higher at the late vegetative stage in Arabidopsis under elevated and supraoptimal CO2.

Taxon
ArabidopsisArabidopsist0
Organ / stage
late vegetative stagee4
Outcome
soluble sugar contente4
Direction
highere4

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“Differential Physiological Responses of Arabidopsis to Optimal and Supraoptimal Atmospheric CO2”

✓ located verbatim in the source · title, characters 48–143 · show in text ↑
e4

“Although starch accumulation was induced by both elevated and SE [CO(2)], the increase was less at the late vegetative stage and accompanied by higher soluble sugar content”

✓ located verbatim in the source · abstract, characters 1480–1652 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Transcript and metabolite profiling revealed very different responses of Arabidopsis to elevated versus supraoptimal CO2.

Taxon
ArabidopsisArabidopsist0
Treatment
elevated versus SE [CO(2)]e7
Outcome
very different responsese7

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“Differential Physiological Responses of Arabidopsis to Optimal and Supraoptimal Atmospheric CO2”

✓ located verbatim in the source · title, characters 48–143 · show in text ↑
e7

“Transcript and metabolite profiling revealed very different responses to elevated versus SE [CO(2)]”

✓ located verbatim in the source · abstract, characters 895–994 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Developmental stage had a clear effect on the molecular response of Arabidopsis to elevated and supraoptimal CO2.

Taxon
ArabidopsisArabidopsist0
Organ / stage
Development stagee6
Outcome
plant molecular responsee6

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis
Arabidopsis · Taxon · picture of the genus (one of its species)Original uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“Differential Physiological Responses of Arabidopsis to Optimal and Supraoptimal Atmospheric CO2”

✓ located verbatim in the source · title, characters 48–143 · show in text ↑
e6

“Development stage had a clear effect on plant molecular response to elevated and SE [CO(2)]”

✓ located verbatim in the source · abstract, characters 1083–1174 · show in text ↑

co2 · molecular: expression · ArabidopsisPositive and negative results

8 papers: 5 positive, 3 negative or no effect

2 papers in the same direction as this paper · 5 in the opposite direction

  1. negative
  2. positive
  3. positive

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Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.