Paper · 2005 · Canadian Journal of Microbiology

Colonization of Phaseolus vulgaris nodules by Agrobacterium-like strains

Ridha Mhamdi; Moncef Mrabet; Gisèle Laguerre; et al.

8
claims
18
verbatim quotes
71
citations
3
research areas
—
Not open access

Abstract

Non-nodulating Agrobacterium-like strains identified among root nodule isolates of common bean were labeled with gusA, a reporter gene encoding beta-glucuronidase (GUS). Bean plants were then co-inoculated with an infective Rhizobium strain and labeled transconjugants of Agrobacterium-like strains. Blue staining of nodules showed that Agrobacterium-like strains were able to colonize these symbiotic organs. Isolation and characterization by restriction fragment length polymorphism analysis of PCR-amplified 16S rRNA genes revealed a mixed population of Rhizobium and Agrobacterium-like strains in all nodules showing GUS activity. PCR amplification of the nifH gene and nodulation tests did not show any evidence of acquisition of symbiotic gene by lateral transfer from Rhizobium to Agrobacterium-like strains. Moreover, these strains were able to invade mature nodules. Based on sequencing of the 16S rRNA gene, one of these Agrobacterium-like strains showed 99.4% sequence similarity with Agrobacterium bv. 1 reference strains and 99% similarity with an Agrobacterium bv. 1 strain isolated from Acacia mollisima in Senegal. Agrobacterium tumefaciens C58 and the disarmed variant AT123 did not show any ability to colonize nodules. Co-inoculation of bean seeds with Agrobacterium and Rhizobium strains did not enhance nodulation and plant yield under controlled conditions.

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Claims 8

Observationobservedoriginal resultmeasured

Claim · model-written summary

Agrobacterium-like strains were able to colonize Phaseolus vulgaris nodules.

Taxon
Phaseolus vulgarisPhaseolus vulgarist0
Organ / stage
nodulese0
Interactor
Agrobacterium-like strainse0symbiont
Outcome
colonize these symbiotic organse0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Phaseolus vulgaris
Phaseolus vulgaris · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Blue staining of nodules showed that Agrobacterium-like strains were able to colonize these symbiotic organs”

✓ located verbatim in the source · abstract, characters 300–408 · show in text ↑
t0

“Colonization of Phaseolus vulgaris nodules by Agrobacterium-like strains”

✓ located verbatim in the source · title, characters 0–72 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Bean nodules contained a mixed population of Rhizobium and Agrobacterium-like strains.

Taxon
Phaseolus vulgarisPhaseolus vulgarist0
Organ / stage
nodulese1
Interactor
RhizobiumRhizobiume1symbiont
Second interactor
Agrobacterium-like strainse1symbiont
Outcome
mixed populatione1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Phaseolus vulgaris
Phaseolus vulgaris · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗
Rhizobium
Rhizobium · Interactor · picture of the genus (one of its species)Ninjatacoshell · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e1

“Isolation and characterization by restriction fragment length polymorphism analysis of PCR-amplified 16S rRNA genes revealed a mixed population of Rhizobium and Agrobacterium-like strains in all nodules showing GUS activity”

✓ located verbatim in the source · abstract, characters 410–633 · show in text ↑
t0

“Colonization of Phaseolus vulgaris nodules by Agrobacterium-like strains”

✓ located verbatim in the source · title, characters 0–72 · show in text ↑
Observationobservedoriginal resultno effectmeasured

Claim · model-written summary

No evidence was found for acquisition of the nifH symbiotic gene by Agrobacterium-like strains from Rhizobium by lateral transfer.

Taxon
Phaseolus vulgarisPhaseolus vulgarist0
Interactor
Agrobacterium-like strainse2symbiont
Second interactor
RhizobiumRhizobiume2symbiont
Gene
nifHe2
Outcome
acquisition of symbiotic gene by lateral transfere2

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Phaseolus vulgaris
Phaseolus vulgaris · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗
Rhizobium
Rhizobium · Second interactor · picture of the genus (one of its species)Ninjatacoshell · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e2

“PCR amplification of the nifH gene and nodulation tests did not show any evidence of acquisition of symbiotic gene by lateral transfer from Rhizobium to Agrobacterium-like strains”

✓ located verbatim in the source · abstract, characters 635–814 · show in text ↑
t0

“Colonization of Phaseolus vulgaris nodules by Agrobacterium-like strains”

✓ located verbatim in the source · title, characters 0–72 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Agrobacterium-like strains were able to invade mature bean nodules.

Taxon
Phaseolus vulgarisPhaseolus vulgarist0
Organ / stage
mature nodulese3
Interactor
Agrobacterium-like strainse0symbiont
Outcome
invade mature nodulese3

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Phaseolus vulgaris
Phaseolus vulgaris · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Blue staining of nodules showed that Agrobacterium-like strains were able to colonize these symbiotic organs”

✓ located verbatim in the source · abstract, characters 300–408 · show in text ↑
e3

“Moreover, these strains were able to invade mature nodules”

✓ located verbatim in the source · abstract, characters 816–874 · show in text ↑
t0

“Colonization of Phaseolus vulgaris nodules by Agrobacterium-like strains”

✓ located verbatim in the source · title, characters 0–72 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

One bean nodule Agrobacterium-like strain showed 99.4% 16S rRNA sequence similarity with Agrobacterium bv. 1 reference strains.

Taxon
Phaseolus vulgarisPhaseolus vulgarist0
Interactor
Agrobacterium-like strainse4symbiont
Outcome
sequence similaritye4
Value
99.4%e4
Comparator
Agrobacterium bv. 1 reference strainse4

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Phaseolus vulgaris
Phaseolus vulgaris · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e4

“one of these Agrobacterium-like strains showed 99.4% sequence similarity with Agrobacterium bv. 1 reference strains”

✓ located verbatim in the source · abstract, characters 918–1033 · show in text ↑
t0

“Colonization of Phaseolus vulgaris nodules by Agrobacterium-like strains”

✓ located verbatim in the source · title, characters 0–72 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

A bean nodule Agrobacterium-like strain showed 99% similarity with an Agrobacterium bv. 1 strain isolated from Acacia mollisima.

Taxon
Phaseolus vulgarisPhaseolus vulgarist0
Interactor
Agrobacterium-like strainse0symbiont
Outcome
similaritye5
Value
99%e5
Comparator
an Agrobacterium bv. 1 strain isolated from Acacia mollisima in Senegale5

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Phaseolus vulgaris
Phaseolus vulgaris · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e5

“99% similarity with an Agrobacterium bv. 1 strain isolated from Acacia mollisima in Senegal”

✓ located verbatim in the source · abstract, characters 1038–1129 · show in text ↑
e0

“Blue staining of nodules showed that Agrobacterium-like strains were able to colonize these symbiotic organs”

✓ located verbatim in the source · abstract, characters 300–408 · show in text ↑
t0

“Colonization of Phaseolus vulgaris nodules by Agrobacterium-like strains”

✓ located verbatim in the source · title, characters 0–72 · show in text ↑
Observationobservedoriginal resultno effectmeasured

Claim · model-written summary

Agrobacterium tumefaciens C58 and AT123 did not colonize bean nodules.

Taxon
Phaseolus vulgarisPhaseolus vulgarist0
Organ / stage
nodulese6
Interactor
Agrobacterium tumefaciens C58Agrobacterium tumefaciense6other
Second interactor
AT123e6other
Outcome
ability to colonize nodulese6

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Phaseolus vulgaris
Phaseolus vulgaris · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗
Agrobacterium tumefaciens
Agrobacterium tumefaciens · InteractorClemson University - USDA Cooperative Extension Slide Series, Bugwood.org · Public domain · Wikimedia Commons ↗

Verbatim

e6

“Agrobacterium tumefaciens C58 and the disarmed variant AT123 did not show any ability to colonize nodules”

✓ located verbatim in the source · abstract, characters 1131–1236 · show in text ↑
t0

“Colonization of Phaseolus vulgaris nodules by Agrobacterium-like strains”

✓ located verbatim in the source · title, characters 0–72 · show in text ↑
Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

Co-inoculation of bean seeds with Agrobacterium and Rhizobium strains did not enhance nodulation or plant yield under controlled conditions.

Taxon
Phaseolus vulgarisPhaseolus vulgarist0
Treatment
Co-inoculation of bean seeds with Agrobacterium and Rhizobium strainse7
Interactor
AgrobacteriumAgrobacteriume7symbiont
Second interactor
RhizobiumRhizobiume7symbiont
Outcome
nodulation and plant yielde7
Direction
did not enhancee7
Setting
controlled conditionse7

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Phaseolus vulgaris
Phaseolus vulgaris · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗
Agrobacterium
Agrobacterium · Interactor · picture from its Wikimedia Commons categoryDidierFy · CC BY-SA 4.0 · Wikimedia Commons ↗
Rhizobium
Rhizobium · Second interactor · picture of the genus (one of its species)Ninjatacoshell · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e7

“Co-inoculation of bean seeds with Agrobacterium and Rhizobium strains did not enhance nodulation and plant yield under controlled conditions”

✓ located verbatim in the source · abstract, characters 1238–1378 · show in text ↑
t0

“Colonization of Phaseolus vulgaris nodules by Agrobacterium-like strains”

✓ located verbatim in the source · title, characters 0–72 · show in text ↑

Rhizobium · symbiosis · Phaseolus vulgaris (common bean)Positive and negative results

18 papers: 16 positive, 2 negative or no effect

1 paper in the same direction as this paper · 16 in the opposite direction

  1. positive
  2. positive
  3. positive

14 papers more in this group

See all 18 papers →

inoculation · symbiosis · Phaseolus vulgaris (common bean)Positive and negative results

90 papers: 83 positive, 7 negative or no effect

6 papers in the same direction as this paper · 83 in the opposite direction

  1. positive
  2. positive
  3. positive

86 papers more in this group

See all 90 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.