Paper · 2014 · Plant Cell & Environment

Identification and comparative analysis of microRNAs in barnyardgrass (Echinochloa crus‐galli) in response to rice allelopathy

CHANGXUN FANG; YINGZHE LI; CHENGXUN LI; et al.

9
claims
18
verbatim quotes
61
citations
2
research areas
—
Not open access

Abstract

Rice allelopathy is a hot topic in the field of allelopathy, and behaviour of donor allelopathic rice has been well documented. However, few study addresses response of receiver barnyardgrass (BYG). We found that expression of miRNAs relevant to plant hormone signal transduction, nucleotide excision repair and the peroxisome proliferator-activated receptor and p53 signalling pathways was enhanced in BYG co-cultured with the allelopathic rice cultivar PI312777, the expression levels of these miRNAs in BYG plants were positively correlated with allelopathic potential of the co-cultured rice varieties. Treatment of BYG plants with rice-produced phenolic acids also increased miRNA expression in BYG, while treatment with rice-produced terpenoids had no obvious effect on miRNA expression. In the hydroponic system, the largest number of Myxococcus sp. was found in the growth medium containing rice with the highest allelopathic potential. The addition of phenolic acids in the hydroponic medium also increased the number of Myxococcus sp. More interestingly, inoculation with Myxococcus xanthus significantly increased miRNA expression in the treated BYG. Jointed treatments of ferulic acid and M. xanthus led to strongest growth inhibition of BYG. The results suggest that there exist involvement of Myxococcus sp. and mediation of miRNA expression in rice allelopathy against BYG.

Abstract from the paper’s OpenAlex record, shown for indexing and research. Copyright remains with the authors or the publisher. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 9

Associationobservedoriginal resultmeasured

Claim · model-written summary

miRNA expression is enhanced in barnyardgrass co-cultured with the allelopathic rice cultivar PI312777.

Taxon
barnyardgrassEchinochloa crus-gallit0
Treatment
co-cultured with the allelopathic rice cultivar PI312777e1
Interactor
allelopathic rice cultivar PI312777e1other
Outcome
expression of miRNAse1
Direction
enhancede1

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Echinochloa crus-galli
Echinochloa crus-galli · TaxonMichael Becker · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“microRNAs in barnyardgrass”

✓ located verbatim in the source · title, characters 43–69 · show in text ↑
e1

“expression of miRNAs relevant to plant hormone signal transduction, nucleotide excision repair and the peroxisome proliferator-activated receptor and p53 signalling pathways was enhanced in BYG co-cultured with the allelopathic rice cultivar PI312777”

✓ located verbatim in the source · abstract, characters 213–463 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

miRNA expression levels in barnyardgrass are positively correlated with the allelopathic potential of co-cultured rice varieties.

Taxon
barnyardgrassEchinochloa crus-gallit0
Treatment
co-cultured rice varietiese2
Interactor
rice varietiesOryza sativae2other
Outcome
expression levels of these miRNAse2
Direction
positively correlatede2

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Echinochloa crus-galli
Echinochloa crus-galli · TaxonMichael Becker · CC BY-SA 3.0 · Wikimedia Commons ↗
Oryza sativa
Oryza sativa · Interactor · picture from its Wikimedia Commons categoryDesmanthus4food · CC BY-SA 3.0 us · Wikimedia Commons ↗

Verbatim

t0

“microRNAs in barnyardgrass”

✓ located verbatim in the source · title, characters 43–69 · show in text ↑
e2

“the expression levels of these miRNAs in BYG plants were positively correlated with allelopathic potential of the co-cultured rice varieties”

✓ located verbatim in the source · abstract, characters 465–605 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Rice-produced phenolic acids increase miRNA expression in barnyardgrass.

Taxon
barnyardgrassEchinochloa crus-gallit0
Treatment
rice-produced phenolic acidse3
Outcome
miRNA expressione3
Direction
increasede3

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Echinochloa crus-galli
Echinochloa crus-galli · TaxonMichael Becker · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“microRNAs in barnyardgrass”

✓ located verbatim in the source · title, characters 43–69 · show in text ↑
e3

“Treatment of BYG plants with rice-produced phenolic acids also increased miRNA expression in BYG, while treatment with rice-produced terpenoids had no obvious effect on miRNA expression”

✓ located verbatim in the source · abstract, characters 607–792 · show in text ↑
Intervention effectobservedoriginal resultno effectmeasured

Claim · model-written summary

Rice-produced terpenoids had no obvious effect on miRNA expression in barnyardgrass.

Taxon
barnyardgrassEchinochloa crus-gallit0
Treatment
rice-produced terpenoidse3
Outcome
miRNA expressione3
Direction
no obvious effecte3

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Echinochloa crus-galli
Echinochloa crus-galli · TaxonMichael Becker · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“microRNAs in barnyardgrass”

✓ located verbatim in the source · title, characters 43–69 · show in text ↑
e3

“Treatment of BYG plants with rice-produced phenolic acids also increased miRNA expression in BYG, while treatment with rice-produced terpenoids had no obvious effect on miRNA expression”

✓ located verbatim in the source · abstract, characters 607–792 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

The largest number of Myxococcus sp. was found in the growth medium containing the rice with the highest allelopathic potential.

Taxon
barnyardgrassEchinochloa crus-gallit0
Treatment
growth medium containing rice with the highest allelopathic potentiale4
Interactor
Myxococcus sp.Myxococcuse4other
Outcome
number of Myxococcus sp.e4
Direction
largeste4

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Echinochloa crus-galli
Echinochloa crus-galli · TaxonMichael Becker · CC BY-SA 3.0 · Wikimedia Commons ↗
Myxococcus
Myxococcus · Interactor · picture of the genus (one of its species)Trance Gemini on de.wikipedia.org · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“microRNAs in barnyardgrass”

✓ located verbatim in the source · title, characters 43–69 · show in text ↑
e4

“In the hydroponic system, the largest number of Myxococcus sp. was found in the growth medium containing rice with the highest allelopathic potential”

✓ located verbatim in the source · abstract, characters 794–943 · show in text ↑
Intervention effectobservedoriginal resultmeasured

Claim · model-written summary

Adding phenolic acids to the hydroponic medium increases the number of Myxococcus sp.

Taxon
barnyardgrassEchinochloa crus-gallit0
Treatment
addition of phenolic acids in the hydroponic mediume5
Interactor
Myxococcus sp.Myxococcuse5other
Outcome
number of Myxococcus sp.e5
Direction
increasede5

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Echinochloa crus-galli
Echinochloa crus-galli · TaxonMichael Becker · CC BY-SA 3.0 · Wikimedia Commons ↗
Myxococcus
Myxococcus · Interactor · picture of the genus (one of its species)Trance Gemini on de.wikipedia.org · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“microRNAs in barnyardgrass”

✓ located verbatim in the source · title, characters 43–69 · show in text ↑
e5

“The addition of phenolic acids in the hydroponic medium also increased the number of Myxococcus sp.”

✓ located verbatim in the source · abstract, characters 945–1044 · show in text ↑
Intervention effectobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Inoculation with Myxococcus xanthus significantly increases miRNA expression in treated barnyardgrass.

Taxon
barnyardgrassEchinochloa crus-gallit0
Treatment
inoculation with Myxococcus xanthuse6
Interactor
Myxococcus xanthusMyxococcus xanthuse6other
Outcome
miRNA expressione6
Direction
increasede6

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Echinochloa crus-galli
Echinochloa crus-galli · TaxonMichael Becker · CC BY-SA 3.0 · Wikimedia Commons ↗
Myxococcus xanthus
Myxococcus xanthus · InteractorTrance Gemini on de.wikipedia.org · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“microRNAs in barnyardgrass”

✓ located verbatim in the source · title, characters 43–69 · show in text ↑
e6

“More interestingly, inoculation with Myxococcus xanthus significantly increased miRNA expression in the treated BYG”

✓ located verbatim in the source · abstract, characters 1045–1160 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Joint treatment of ferulic acid and M. xanthus gives the strongest growth inhibition of barnyardgrass.

Taxon
barnyardgrassEchinochloa crus-gallit0
Treatment
Jointed treatments of ferulic acid and M. xanthuse7
Interactor
M. xanthuse7other
Outcome
growth inhibitione7
Direction
strongeste7

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Echinochloa crus-galli
Echinochloa crus-galli · TaxonMichael Becker · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“microRNAs in barnyardgrass”

✓ located verbatim in the source · title, characters 43–69 · show in text ↑
e7

“Jointed treatments of ferulic acid and M. xanthus led to strongest growth inhibition of BYG”

✓ located verbatim in the source · abstract, characters 1162–1253 · show in text ↑
Mechanismauthor interpretationoriginal resultbasis n/a

Claim · model-written summary

The results suggest that Myxococcus sp. is involved in, and mediates miRNA expression in, rice allelopathy against barnyardgrass.

Taxon
barnyardgrassEchinochloa crus-gallit0
Outcome
rice allelopathy against BYGe7
Qualifier
involvement of Myxococcus sp. and mediation of miRNA expressione7

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Echinochloa crus-galli
Echinochloa crus-galli · TaxonMichael Becker · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

t0

“microRNAs in barnyardgrass”

✓ located verbatim in the source · title, characters 43–69 · show in text ↑
e7

“The results suggest that there exist involvement of Myxococcus sp. and mediation of miRNA expression in rice allelopathy against BYG”

✓ located verbatim in the source · abstract, characters 1255–1387 · show in text ↑