Paper · 2000 · Genetics and Molecular Biology

Evolutionary relationships in the genus Zea: analysis of repetitive sequences used as cytological FISH and GISH markers

Lidia Poggio; Viviana Confalonieri; Cecilia Comas; et al.

9
claims
10
verbatim quotes
15
citations
2
research areas
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Open access · cc-by

Abstract

The present study is a revision of our work on evolutionary cytogenetics of the genus Zea, including several new experiments which give a deeper insight into the nature of the DNA sequences involved in telomeric regions of Zea luxurians. These new experiments, based on the Southern blotting technique and in situ hybridization, have demonstrated the following: 1) in situ hybridization (FISH) demonstrated the presence of the 180-bp repeat maize-knob-repeat-sequence in DAPI-positive terminal heterochromatic blocks of Z. luxurians (ZL-THB region); 2) Southern blot analysis confirmed that the 180-bp repeat present in maize is also present in Z. diploperennis, Z. luxurians and Tripsacum dactyloides, but not in Z. perennis; 3) another sequence with targeted sites for endonucleases, but without recognition sites for the 180-bp repeat, may be interspersed with the 180-bp repeat in a tandem array sited in the ZL-THB region; 4) in situ hybridization (GISH) of probes and blocking-probes with chromosomes of Z. luxurians (using Z. luxurians as a probe and Z. diploperennis or Z. perennis as a blocking-probe) gave strong fluorescence in both cases. Since Z. diploperennis possesses the 180-bp repeat, fluorescence on Z. luxurians chromosomes was not expected. These results can be explained if the ZL-THB regions are composed not only of 180-bp repeats interspersed with other sequences, but also of other tandem arrays unique to Z. luxurians, which, according to our GISH results, are probably located at the subterminal position.

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Claims 9

Observationobservedoriginal resultmeasured

Claim · model-written summary

The 180-bp repeat occurred in terminal heterochromatin of Z. luxurians.

Taxon
Z. luxuriansZea luxurianse0
Organ / stage
terminal heterochromatic blockse0
Outcome
presence of the 180-bp repeat maize-knob-repeat-sequencee0

Verbatim

e0

“in situ hybridization (FISH) demonstrated the presence of the 180-bp repeat maize-knob-repeat-sequence in DAPI-positive terminal heterochromatic blocks of Z. luxurians (ZL-THB region)”

✓ located verbatim in the source · abstract, characters 365–548 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The 180-bp repeat was present in maize.

Taxon
maizeZea mayse0
Outcome
180-bp repeat presente0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea mays
Zea mays · TaxonAkwugo · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“the 180-bp repeat present in maize is also present in Z. diploperennis, Z. luxurians and Tripsacum dactyloides, but not in Z. perennis”

✓ located verbatim in the source · abstract, characters 591–725 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The 180-bp repeat was present in Z. diploperennis.

Taxon
Z. diploperennisZea diploperennise0
Outcome
180-bp repeate0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea diploperennis
Zea diploperennis · TaxonJeffdelonge · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“the 180-bp repeat present in maize is also present in Z. diploperennis, Z. luxurians and Tripsacum dactyloides, but not in Z. perennis”

✓ located verbatim in the source · abstract, characters 591–725 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The 180-bp repeat was present in Z. luxurians.

Taxon
Z. luxuriansZea luxurianse0
Outcome
180-bp repeate0

Verbatim

e0

“the 180-bp repeat present in maize is also present in Z. diploperennis, Z. luxurians and Tripsacum dactyloides, but not in Z. perennis”

✓ located verbatim in the source · abstract, characters 591–725 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The 180-bp repeat was present in Tripsacum dactyloides.

Taxon
Tripsacum dactyloidesTripsacum dactyloidese0
Outcome
180-bp repeate0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Tripsacum dactyloides
Tripsacum dactyloides · TaxonDaderot · Public domain · Wikimedia Commons ↗

Verbatim

e0

“the 180-bp repeat present in maize is also present in Z. diploperennis, Z. luxurians and Tripsacum dactyloides, but not in Z. perennis”

✓ located verbatim in the source · abstract, characters 591–725 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The 180-bp repeat was absent in Z. perennis.

Taxon
Z. perennisZea perennise0
Outcome
not in Z. perennise0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Zea perennis
Zea perennis · TaxonNo machine-readable author provided. JerryFriedman assumed (based on copyright claims). · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“the 180-bp repeat present in maize is also present in Z. diploperennis, Z. luxurians and Tripsacum dactyloides, but not in Z. perennis”

✓ located verbatim in the source · abstract, characters 591–725 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

A sequence lacking 180-bp recognition sites may be interspersed with the repeat in Z. luxurians.

Taxon
Zea luxuriansZea luxurianse1
Outcome
may be interspersed with the 180-bp repeate0
Qualifier
another sequence with targeted sites for endonucleasese0

Verbatim

e0

“another sequence with targeted sites for endonucleases, but without recognition sites for the 180-bp repeat, may be interspersed with the 180-bp repeat in a tandem array sited in the ZL-THB region”

✓ located verbatim in the source · abstract, characters 730–926 · show in text ↑
e1

“telomeric regions of Zea luxurians”

✓ located verbatim in the source · abstract, characters 202–236 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

GISH gave strong fluorescence on Z. luxurians chromosomes with either blocking probe.

Taxon
Z. luxuriansZea luxurianse0
Treatment
Z. diploperennis or Z. perennis as a blocking-probee0
Outcome
strong fluorescencee0

Verbatim

e0

“in situ hybridization (GISH) of probes and blocking-probes with chromosomes of Z. luxurians (using Z. luxurians as a probe and Z. diploperennis or Z. perennis as a blocking-probe) gave strong fluorescence in both cases”

✓ located verbatim in the source · abstract, characters 931–1149 · show in text ↑
Mechanismauthor interpretationoriginal resultmeasured

Claim · model-written summary

The authors infer unique subterminal tandem arrays in Z. luxurians.

Taxon
Z. luxuriansZea luxurianse0
Outcome
other tandem arrays unique to Z. luxurianse0
Qualifier
probably located at the subterminal positione0

Verbatim

e0

“other tandem arrays unique to Z. luxurians, which, according to our GISH results, are probably located at the subterminal position”

✓ located verbatim in the source · abstract, characters 1402–1532 · show in text ↑