Paper · 2004 · The Plant Cell

Functional Analysis ofAvr9/Cf-9 Rapidly ElicitedGenes Identifies a Protein Kinase, ACIK1, That Is Essential for Full Cf-9–Dependent Disease Resistance in Tomato

Owen Rowland; Andrea A. Ludwig; Catherine J. Merrick; et al.

8
claims
10
verbatim quotes
208
citations
2
research areas
✓
Open access

Abstract

Tomato (Lycopersicon esculentum) Cf genes confer resistance to the fungal pathogen Cladosporium fulvum through recognition of secreted avirulence (Avr) peptides. Plant defense responses, including rapid alterations in gene expression, are immediately activated upon perception of the pathogen. Previously, we identified a collection of Avr9/Cf-9 rapidly (15 to 30 min) elicited (ACRE) genes from tobacco (Nicotiana tabacum). Many of the ACRE genes encode putative signaling components and thus may play pivotal roles in the initial development of the defense response. To assess the requirement of 42 of these genes in the hypersensitive response (HR) induced by Cf-9/Avr9 or by Cf-4/Avr4, we used virus-induced gene silencing (VIGS) in N. benthamiana. Three genes were identified that when silenced compromised the Cf-mediated HR. We further characterized one of these genes, which encodes a Ser/Thr protein kinase called Avr9/Cf-9 induced kinase 1 (ACIK1). ACIK1 mRNA was rapidly upregulated in tobacco and tomato upon elicitation by Avr9 and by wounding. Silencing of ACIK1 in tobacco resulted in a reduced HR that correlated with loss of ACIK1 transcript. Importantly, ACIK1 was found to be required for Cf-9/Avr9- and Cf-4/Avr4-mediated HRs but not for the HR or resistance mediated by other resistance/Avr systems, such as Pto/AvrPto, Rx/Potato virus X, or N/Tobacco mosaic virus. Moreover, VIGS of LeACIK1 in tomato decreased Cf-9-mediated resistance to C. fulvum, showing the importance of ACIK1 in disease resistance.

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Claims 8

Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Silencing three genes compromised Cf-mediated hypersensitive response in N. benthamiana.

Taxon
N. benthamianaNicotiana benthamianae0
Treatment
silencede0
Outcome
Cf-mediated HRe0
Direction
compromisede0
Value
Three genese0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana benthamiana
Nicotiana benthamiana · TaxonCharles Andres · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“we used virus-induced gene silencing (VIGS) in N. benthamiana. Three genes were identified that when silenced compromised the Cf-mediated HR.”

✓ located verbatim in the source · abstract, characters 690–831 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

ACIK1 mRNA was rapidly upregulated in tobacco and tomato upon Avr9 elicitation.

Treatment
elicitation by Avr9e0
Gene
ACIK1e0
Outcome
ACIK1 mRNAe0
Direction
upregulatede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗
Nicotiana tabacum
Nicotiana tabacum · TaxonJom / Joachim Müllerchen · CC BY 2.5 · Wikimedia Commons ↗

Verbatim

e0

“ACIK1 mRNA was rapidly upregulated in tobacco and tomato upon elicitation by Avr9”

✓ located verbatim in the source · abstract, characters 959–1040 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

ACIK1 mRNA was rapidly upregulated in tobacco and tomato upon wounding.

Treatment
woundinge0
Gene
ACIK1e0
Outcome
ACIK1 mRNAe0
Direction
upregulatede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗
Nicotiana tabacum
Nicotiana tabacum · TaxonJom / Joachim Müllerchen · CC BY 2.5 · Wikimedia Commons ↗

Verbatim

e0

“ACIK1 mRNA was rapidly upregulated in tobacco and tomato upon elicitation by Avr9 and by wounding.”

✓ located verbatim in the source · abstract, characters 959–1057 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

ACIK1 silencing reduced hypersensitive response in tobacco.

Treatment
Silencing of ACIK1e0
Gene
ACIK1e0
Outcome
HRe0
Direction
reducede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana tabacum
Nicotiana tabacum · TaxonJom / Joachim Müllerchen · CC BY 2.5 · Wikimedia Commons ↗

Verbatim

e0

“Silencing of ACIK1 in tobacco resulted in a reduced HR that correlated with loss of ACIK1 transcript.”

✓ located verbatim in the source · abstract, characters 1058–1159 · show in text ↑
Associationobservedoriginal resultnegativemeasured

Claim · model-written summary

Reduced hypersensitive response correlated with loss of ACIK1 transcript in tobacco.

Gene
ACIK1e0
Outcome
HRe0
Direction
reducede0
Qualifier
loss of ACIK1 transcripte0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana tabacum
Nicotiana tabacum · TaxonJom / Joachim Müllerchen · CC BY 2.5 · Wikimedia Commons ↗

Verbatim

e0

“Silencing of ACIK1 in tobacco resulted in a reduced HR that correlated with loss of ACIK1 transcript.”

✓ located verbatim in the source · abstract, characters 1058–1159 · show in text ↑
Mechanismauthor interpretationoriginal resultpositivemeasured

Claim · model-written summary

ACIK1 was required for Cf-9/Avr9-mediated hypersensitive response.

Gene
ACIK1e0
Outcome
Cf-9/Avr9- and Cf-4/Avr4-mediated HRse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana tabacum
Nicotiana tabacum · TaxonJom / Joachim Müllerchen · CC BY 2.5 · Wikimedia Commons ↗

Verbatim

e0

“ACIK1 was found to be required for Cf-9/Avr9- and Cf-4/Avr4-mediated HRs”

✓ located verbatim in the source · abstract, characters 1173–1245 · show in text ↑
e1

“Silencing of ACIK1 in tobacco resulted in a reduced HR”

✓ located verbatim in the source · abstract, characters 1058–1112 · show in text ↑
Observationobservedoriginal resultno effectmeasured

Claim · model-written summary

ACIK1 was not required for hypersensitive response or resistance mediated by other resistance/Avr systems.

Outcome
HR or resistance mediated by other resistance/Avr systemse0
Qualifier
Pto/AvrPto, Rx/Potato virus X, or N/Tobacco mosaic viruse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Nicotiana tabacum
Nicotiana tabacum · TaxonJom / Joachim Müllerchen · CC BY 2.5 · Wikimedia Commons ↗

Verbatim

e0

“but not for the HR or resistance mediated by other resistance/Avr systems, such as Pto/AvrPto, Rx/Potato virus X, or N/Tobacco mosaic virus.”

✓ located verbatim in the source · abstract, characters 1246–1386 · show in text ↑
e1

“Silencing of ACIK1 in tobacco resulted in a reduced HR”

✓ located verbatim in the source · abstract, characters 1058–1112 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Silencing LeACIK1 decreased Cf-9-mediated resistance to C. fulvum in tomato.

Treatment
VIGS of LeACIK1e0
Interactor
C. fulvumFulvia fulvae0pathogen
Gene
LeACIK1e0
Outcome
Cf-9-mediated resistance to C. fulvume0
Direction
decreasede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Solanum lycopersicum
Solanum lycopersicum · TaxonKod B · CC BY-SA 4.0 · Wikimedia Commons ↗
Fulvia fulva
Fulvia fulva · InteractorGoldlocki · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“VIGS of LeACIK1 in tomato decreased Cf-9-mediated resistance to C. fulvum”

✓ located verbatim in the source · abstract, characters 1397–1470 · show in text ↑

loss of function · Fulvia fulva · Solanum lycopersicum (tomato)Positive and negative results

13 papers: 3 positive, 10 negative or no effect

9 papers in the same direction as this paper · 3 in the opposite direction

  1. negative
  2. negative
  3. no effect

9 papers more in this group

See all 13 papers →

mechanical · molecular: expression · Nicotiana tabacum (tobacco)Positive and negative results

21 papers: 17 positive, 4 negative or no effect

16 papers in the same direction as this paper · 4 in the opposite direction

  1. no effect
  2. no effect
  3. no effect

17 papers more in this group

See all 21 papers →

mechanical · molecular: expression · Solanum lycopersicum (tomato)Positive and negative results

22 papers: 16 positive, 6 negative or no effect

15 papers in the same direction as this paper · 6 in the opposite direction

  1. no effect
  2. no effect
  3. no effect

18 papers more in this group

See all 22 papers →

loss of function · disease · Nicotiana tabacum (tobacco)Positive and negative results

56 papers: 21 positive, 35 negative or no effect

34 papers in the same direction as this paper · 21 in the opposite direction

  1. negative
  2. negative
  3. positive

52 papers more in this group

See all 56 papers →

loss of function · disease · Nicotiana benthamianaPositive and negative results

143 papers: 50 positive, 93 negative or no effect

92 papers in the same direction as this paper · 50 in the opposite direction

  1. negative
  2. positive
  3. positive

139 papers more in this group

See all 143 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.