Paper · 2011 · Indian Journal of Horticulture

A linkage map for Cucurbita maxima based on randomly amplified polymorphic DNA (RAPD) markers

Anurudh Kumar Singh; Rakesh Singh; N. F. Weeden; et al.

12
claims
21
verbatim quotes
7
citations
3
research areas
✓
Open access

Abstract

Linkage information is needed for marker-assisted selection in squash and pumpkin breeding programs involving Cucurbita ecuadorensis, a source of resistance to many diseases. a mapping population was produced by backcrossing an inter-specific cross of C. maxima x C. ecuadorensis to C. maxima. One hundred raPD primers were used to survey the parental polymorphism, and 42 of these found to be polymorphic between the parents were used for construction of a linkage map. the 42 primers generated 122 distinct and reproducible bands for 55 plants of the BC F 1 population. a linkage map consisting of 102 markers on 22 linkage groups was produced with an approximate length of approximately 1195.2 cM. the segregation of most of these markers did not deviate from the expected 1:1 ratio. Some terminal markers on several linkage groups displayed significant deviation from a 1:1 ratio. Only two linkage groups (12 and 22) had a majority of markers that exhibited significant segregation distortion. a total of 20 raPDs remained unmapped, and nine of these displayed highly distorted (P< 0.01) segregation ratios, suggesting that they were not single sequences segregating genetically. Thus this first linkage map for C. maxima appears to give good coverage of the genome. Predominant normal segregation of most markers suggests significant homology between C. maxima and C. ecuadorensis genome, and that much of the useful traits of C. ecuadorensis could be introgressed into C. maxima.

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Claims 12

Observationobservedoriginal resultmeasured

Claim · model-written summary

Forty-two RAPD primers were polymorphic between the parents.

Taxon
Cucurbita maximaCucurbita maximat0
Outcome
polymorphic between the parentse0
Value
42e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Cucurbita maxima
Cucurbita maxima · Taxonmikami-kun · CC BY 4.0 · iNaturalist ↗

Verbatim

e0

“One hundred raPD primers were used to survey the parental polymorphism, and 42 of these found to be polymorphic between the parents were used for construction of a linkage map.”

✓ located verbatim in the source · abstract, characters 294–470 · show in text ↑
t0

“Cucurbita maxima”

✓ located verbatim in the source · title, characters 18–34 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

The 42 primers generated 122 reproducible bands in 55 BC F 1 plants.

Taxon
Cucurbita maximaCucurbita maximat0
Material
BC F 1 populatione0
Outcome
distinct and reproducible bandse0
Value
122e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Cucurbita maxima
Cucurbita maxima · Taxonmikami-kun · CC BY 4.0 · iNaturalist ↗

Verbatim

e0

“the 42 primers generated 122 distinct and reproducible bands for 55 plants of the BC F 1 population.”

✓ located verbatim in the source · abstract, characters 471–571 · show in text ↑
t0

“Cucurbita maxima”

✓ located verbatim in the source · title, characters 18–34 · show in text ↑
Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

The map contained 102 markers on 22 linkage groups.

Taxon
Cucurbita maximaCucurbita maximat0
Outcome
linkage mape0
Value
102 markerse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Cucurbita maxima
Cucurbita maxima · Taxonmikami-kun · CC BY 4.0 · iNaturalist ↗

Verbatim

e0

“a linkage map consisting of 102 markers on 22 linkage groups was produced with an approximate length of approximately 1195.2 cM.”

✓ located verbatim in the source · abstract, characters 572–700 · show in text ↑
t0

“Cucurbita maxima”

✓ located verbatim in the source · title, characters 18–34 · show in text ↑
Method / resourceobservedoriginal resultmeasured

Claim · model-written summary

The linkage map spanned approximately 1195.2 cM.

Taxon
Cucurbita maximaCucurbita maximat0
Outcome
linkage mape0
Value
1195.2 cMe0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Cucurbita maxima
Cucurbita maxima · Taxonmikami-kun · CC BY 4.0 · iNaturalist ↗

Verbatim

e0

“a linkage map consisting of 102 markers on 22 linkage groups was produced with an approximate length of approximately 1195.2 cM.”

✓ located verbatim in the source · abstract, characters 572–700 · show in text ↑
t0

“Cucurbita maxima”

✓ located verbatim in the source · title, characters 18–34 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Most markers did not deviate from the expected 1:1 segregation ratio.

Taxon
Cucurbita maximaCucurbita maximat0
Outcome
segregation of most of these markerse0
Comparator
expected 1:1 ratioe0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Cucurbita maxima
Cucurbita maxima · Taxonmikami-kun · CC BY 4.0 · iNaturalist ↗

Verbatim

e0

“the segregation of most of these markers did not deviate from the expected 1:1 ratio.”

✓ located verbatim in the source · abstract, characters 701–786 · show in text ↑
t0

“Cucurbita maxima”

✓ located verbatim in the source · title, characters 18–34 · show in text ↑
Observationobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Some terminal markers had significant segregation distortion.

Taxon
Cucurbita maximaCucurbita maximat0
Material
terminal markerse0
Outcome
deviation from a 1:1 ratioe0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Cucurbita maxima
Cucurbita maxima · Taxonmikami-kun · CC BY 4.0 · iNaturalist ↗

Verbatim

e0

“Some terminal markers on several linkage groups displayed significant deviation from a 1:1 ratio.”

✓ located verbatim in the source · abstract, characters 787–884 · show in text ↑
t0

“Cucurbita maxima”

✓ located verbatim in the source · title, characters 18–34 · show in text ↑
Observationobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Linkage groups 12 and 22 each had a majority of distorted markers.

Taxon
Cucurbita maximaCucurbita maximat0
Outcome
segregation distortione0
Value
two linkage groupse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Cucurbita maxima
Cucurbita maxima · Taxonmikami-kun · CC BY 4.0 · iNaturalist ↗

Verbatim

e0

“Only two linkage groups (12 and 22) had a majority of markers that exhibited significant segregation distortion.”

✓ located verbatim in the source · abstract, characters 885–997 · show in text ↑
t0

“Cucurbita maxima”

✓ located verbatim in the source · title, characters 18–34 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Twenty RAPDs remained unmapped.

Taxon
Cucurbita maximaCucurbita maximat0
Outcome
remained unmappede0
Value
20 raPDse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Cucurbita maxima
Cucurbita maxima · Taxonmikami-kun · CC BY 4.0 · iNaturalist ↗

Verbatim

e0

“a total of 20 raPDs remained unmapped”

✓ located verbatim in the source · abstract, characters 998–1035 · show in text ↑
t0

“Cucurbita maxima”

✓ located verbatim in the source · title, characters 18–34 · show in text ↑
Observationobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Nine unmapped RAPDs had highly distorted segregation ratios.

Taxon
Cucurbita maximaCucurbita maximat0
Outcome
segregation ratiose0
Value
ninee0
Qualifier
P< 0.01e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Cucurbita maxima
Cucurbita maxima · Taxonmikami-kun · CC BY 4.0 · iNaturalist ↗

Verbatim

e0

“nine of these displayed highly distorted (P< 0.01) segregation ratios”

✓ located verbatim in the source · abstract, characters 1041–1110 · show in text ↑
t0

“Cucurbita maxima”

✓ located verbatim in the source · title, characters 18–34 · show in text ↑
Method / resourceauthor interpretationoriginal resultmeasured

Claim · model-written summary

The authors infer the first map gives good genome coverage.

Taxon
C. maximaCucurbita maximae0
Outcome
good coverage of the genomee0
Value
firste0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Cucurbita maxima
Cucurbita maxima · Taxonmikami-kun · CC BY 4.0 · iNaturalist ↗

Verbatim

e0

“Thus this first linkage map for C. maxima appears to give good coverage of the genome.”

✓ located verbatim in the source · abstract, characters 1184–1270 · show in text ↑
Associationauthor interpretationoriginal resultsignificant (as stated)measured

Claim · model-written summary

Predominantly normal marker segregation suggests significant homology between the two genomes.

Taxon
C. maximaCucurbita maximae0
Outcome
homology between C. maxima and C. ecuadorensis genomee0
Comparator
C. ecuadorensise0

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Cucurbita maxima
Cucurbita maxima · Taxonmikami-kun · CC BY 4.0 · iNaturalist ↗

Verbatim

e0

“Predominant normal segregation of most markers suggests significant homology between C. maxima and C. ecuadorensis genome”

✓ located verbatim in the source · abstract, characters 1271–1392 · show in text ↑
Recommendationauthor interpretationoriginal resultbasis n/a

Claim · model-written summary

The authors suggest useful C. ecuadorensis traits could be introgressed into C. maxima.

Taxon
C. maximaCucurbita maximae0
Outcome
useful traits of C. ecuadorensis could be introgressed into C. maximae0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Cucurbita maxima
Cucurbita maxima · Taxonmikami-kun · CC BY 4.0 · iNaturalist ↗

Verbatim

e0

“and that much of the useful traits of C. ecuadorensis could be introgressed into C. maxima.”

✓ located verbatim in the source · abstract, characters 1394–1485 · show in text ↑