Paper · 2016 · Rice Research Open Access

Evaluation of Factors Impacting Agrobacterium-Mediated Indica Rice Transformation of IR58025B - a Public Maintainer Line

Huaping Gui; Xia Li

10
claims
20
verbatim quotes
2
citations
3
research areas
✓
Open access · cc-by

Abstract

n this study, we report our efforts to develop an efficient Agrobacterium-mediated transformation protocol for the transformation of Indica rice IR58025B with mannose as a selection agent. Various factors, such as basal medium, culture temperature, strains for infection, air-drying duration of calli after infection, and salt concentration of coculture medium, were systematically optimized so that the highest transformation frequency (TF) reached to 74%. About 94% of mature embryos were induced to generate calli of high quality on modified NB medium. Both callus quantity and quality were improved when callus was induced from endosperm-free embryos in comparison to intact mature seeds. Higher temperature (32°C) showed improvements when compared to lower temperatures at (25°C and 28°C) for both callus induction and transformation. Agrobacterium strains of EHA105 produced the best TF in comparison with EHA101, LBA4404 and AGL1. However, LBA4404 produced the highest single copy frequency. Prior to co-cultivation, air-drying of inoculated calli was performed in a laminar flow hood for 4-7 hours and produced a higher TF. Lower salt concentration for co-cultivation medium enhanced both DNA delivery and TF.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 10

Method / resourceobservedoriginal resultpositivemeasured

Claim · model-written summary

The optimized rice transformation protocol reached 74% transformation frequency.

Material
IR58025Bt0
Outcome
transformation frequency (TF)e0
Value
74%e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa Indica Group
Oryza sativa Indica Group · TaxonNo machine-readable author provided. Ranveig assumed (based on copyright claims). · Public domain · Wikimedia Commons ↗

Verbatim

e0

“highest transformation frequency (TF) reached to 74%.”

✓ located verbatim in the source · abstract, characters 404–457 · show in text ↑
t0

“Indica Rice Transformation of IR58025B”

✓ located verbatim in the source · title, characters 55–93 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Modified NB medium induced high-quality calli from about 94% of mature embryos.

Material
IR58025Bt0
Treatment
modified NB mediume0
Outcome
mature embryos were induced to generate calli of high qualitye0
Direction
inducede0
Value
94%e0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa Indica Group
Oryza sativa Indica Group · TaxonNo machine-readable author provided. Ranveig assumed (based on copyright claims). · Public domain · Wikimedia Commons ↗

Verbatim

e0

“About 94% of mature embryos were induced to generate calli of high quality on modified NB medium.”

✓ located verbatim in the source · abstract, characters 458–555 · show in text ↑
t0

“Indica Rice Transformation of IR58025B”

✓ located verbatim in the source · title, characters 55–93 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Endosperm-free embryos improved callus quantity and quality relative to intact mature seeds.

Material
IR58025Bt0
Treatment
endosperm-free embryose0
Outcome
callus quantity and qualitye0
Direction
improvede0
Comparator
intact mature seedse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa Indica Group
Oryza sativa Indica Group · TaxonNo machine-readable author provided. Ranveig assumed (based on copyright claims). · Public domain · Wikimedia Commons ↗

Verbatim

e0

“Both callus quantity and quality were improved when callus was induced from endosperm-free embryos in comparison to intact mature seeds.”

✓ located verbatim in the source · abstract, characters 556–692 · show in text ↑
t0

“Indica Rice Transformation of IR58025B”

✓ located verbatim in the source · title, characters 55–93 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

At 32°C, callus induction improved relative to 25°C and 28°C.

Material
IR58025Bt0
Treatment
Higher temperature (32°C)e0
Outcome
callus inductione0
Direction
improvementse0
Comparator
lower temperatures at (25°C and 28°C)e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa Indica Group
Oryza sativa Indica Group · TaxonNo machine-readable author provided. Ranveig assumed (based on copyright claims). · Public domain · Wikimedia Commons ↗

Verbatim

e0

“Higher temperature (32°C) showed improvements when compared to lower temperatures at (25°C and 28°C) for both callus induction and transformation.”

✓ located verbatim in the source · abstract, characters 693–839 · show in text ↑
t0

“Indica Rice Transformation of IR58025B”

✓ located verbatim in the source · title, characters 55–93 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

At 32°C, transformation improved relative to 25°C and 28°C.

Material
IR58025Bt0
Treatment
Higher temperature (32°C)e0
Outcome
transformatione0
Direction
improvementse0
Comparator
lower temperatures at (25°C and 28°C)e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa Indica Group
Oryza sativa Indica Group · TaxonNo machine-readable author provided. Ranveig assumed (based on copyright claims). · Public domain · Wikimedia Commons ↗

Verbatim

e0

“Higher temperature (32°C) showed improvements when compared to lower temperatures at (25°C and 28°C) for both callus induction and transformation.”

✓ located verbatim in the source · abstract, characters 693–839 · show in text ↑
t0

“Indica Rice Transformation of IR58025B”

✓ located verbatim in the source · title, characters 55–93 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

EHA105 yielded the best transformation frequency among the tested Agrobacterium strains.

Material
IR58025Bt0
Treatment
EHA105e0
Interactor
Agrobacterium strains of EHA105e0other
Outcome
TFe0
Direction
beste0
Comparator
EHA101, LBA4404 and AGL1e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa Indica Group
Oryza sativa Indica Group · TaxonNo machine-readable author provided. Ranveig assumed (based on copyright claims). · Public domain · Wikimedia Commons ↗

Verbatim

e0

“Agrobacterium strains of EHA105 produced the best TF in comparison with EHA101, LBA4404 and AGL1.”

✓ located verbatim in the source · abstract, characters 840–937 · show in text ↑
t0

“Indica Rice Transformation of IR58025B”

✓ located verbatim in the source · title, characters 55–93 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

LBA4404 produced the highest single-copy frequency.

Material
IR58025Bt0
Treatment
LBA4404e0
Outcome
single copy frequencye0
Direction
higheste0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa Indica Group
Oryza sativa Indica Group · TaxonNo machine-readable author provided. Ranveig assumed (based on copyright claims). · Public domain · Wikimedia Commons ↗

Verbatim

e0

“However, LBA4404 produced the highest single copy frequency.”

✓ located verbatim in the source · abstract, characters 938–998 · show in text ↑
t0

“Indica Rice Transformation of IR58025B”

✓ located verbatim in the source · title, characters 55–93 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Air drying inoculated calli for 4-7 hours before cocultivation raised transformation frequency.

Material
IR58025Bt0
Treatment
air-drying of inoculated callie0
Outcome
TFe0
Direction
highere0
Qualifier
for 4-7 hourse0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa Indica Group
Oryza sativa Indica Group · TaxonNo machine-readable author provided. Ranveig assumed (based on copyright claims). · Public domain · Wikimedia Commons ↗

Verbatim

e0

“Prior to co-cultivation, air-drying of inoculated calli was performed in a laminar flow hood for 4-7 hours and produced a higher TF.”

✓ located verbatim in the source · abstract, characters 999–1131 · show in text ↑
t0

“Indica Rice Transformation of IR58025B”

✓ located verbatim in the source · title, characters 55–93 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Lower cocultivation medium salt concentration enhanced DNA delivery.

Material
IR58025Bt0
Treatment
Lower salt concentration for co-cultivation mediume0
Outcome
DNA deliverye0
Direction
enhancede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa Indica Group
Oryza sativa Indica Group · TaxonNo machine-readable author provided. Ranveig assumed (based on copyright claims). · Public domain · Wikimedia Commons ↗

Verbatim

e0

“Lower salt concentration for co-cultivation medium enhanced both DNA delivery and TF.”

✓ located verbatim in the source · abstract, characters 1132–1217 · show in text ↑
t0

“Indica Rice Transformation of IR58025B”

✓ located verbatim in the source · title, characters 55–93 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Lower cocultivation medium salt concentration enhanced transformation frequency.

Material
IR58025Bt0
Treatment
Lower salt concentration for co-cultivation mediume0
Outcome
TFe0
Direction
enhancede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Oryza sativa Indica Group
Oryza sativa Indica Group · TaxonNo machine-readable author provided. Ranveig assumed (based on copyright claims). · Public domain · Wikimedia Commons ↗

Verbatim

e0

“Lower salt concentration for co-cultivation medium enhanced both DNA delivery and TF.”

✓ located verbatim in the source · abstract, characters 1132–1217 · show in text ↑
t0

“Indica Rice Transformation of IR58025B”

✓ located verbatim in the source · title, characters 55–93 · show in text ↑

in vitro · quality: general · Oryza sativa (rice)Positive and negative results

9 papers: 7 positive, 2 negative or no effect

6 papers in the same direction as this paper · 2 in the opposite direction

  1. negative
  2. negative
  3. positive

5 papers more in this group

See all 9 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.