Paper · 2016 · FEMS Microbiology Ecology

Functional characterization of a soybean growth stimulatorBradyrhizobiumsp. strain SR-6 showing acylhomoserine lactone production

Amanat Ali; Ayesha; Sohail Hameed; et al.

13
claims
23
verbatim quotes
18
citations
3
research areas
✓
Open access

Abstract

A soybean nodule endophytic bacterium Bradyrhizobium sp. strain SR-6 was characterized for production of acyl homoserine lactones (AHLs) as quorum sensing molecules. Mass spectrometry analysis of AHLs revealed the presence of C6-HSL, 3OH-C6-HSL, C8-HSL, C10-HSL, 3oxoC10-HSL, 3oxo-C12-HSL and 3OH-C12-HSL which are significantly different from those reported earlier in soybean symbionts. Purified AHL extracts significantly improved wheat and soybean seedling growth and root hair development along with increased soybean nodulation under axenic conditions. A positive correlation was observed among in vivo nitrogenase and catalase enzyme activities of the strain SR-6. Transmission electron microscopic analysis showed the cytochemical localization of catalase activity within the bacteroids, specifically attached to the peribacteroidal membrane. Root and nodule colonization proved rhizosphere competence of SR-6. The inoculation of SR-6 resulted in increased shoot length (13%), plant dry matter (50%), grain weight (16%), seed yield (20%) and N-uptake (14%) as compared to non-inoculated soybean plants. The symbiotic bacterium SR-6 has potential to improve soybean growth and yield in sub-humid climate of Azad Jammu and Kashmir region of Pakistan. The production and mass spectrometric profiling of AHLs as well as in vivo cytochemical localization of catalase enzyme activity in soybean Bradyrhizobium sp. have never been reported earlier elsewhere before our these investigations.

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Claims 13

Observationobservedoriginal resultsignificant (as stated)measured

Claim · model-written summary

Bradyrhizobium SR-6 contained seven detected acyl homoserine lactones differing significantly from earlier soybean symbiont reports.

Taxon
soybeanGlycine maxe1
Interactor
Bradyrhizobium sp. strain SR-6Bradyrhizobium sp.e1symbiont
Outcome
presence of C6-HSL, 3OH-C6-HSL, C8-HSL, C10-HSL, 3oxoC10-HSL, 3oxo-C12-HSL and 3OH-C12-HSLe0
Comparator
those reported earlier in soybean symbiontse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗
Bradyrhizobium sp.
Bradyrhizobium sp. · Interactor · picture of its genus (no picture of exactly this name)Louisa Howard - Dartmouth Electron Microscope Facility · Public domain · Wikimedia Commons ↗

Verbatim

e0

“Mass spectrometry analysis of AHLs revealed the presence of C6-HSL, 3OH-C6-HSL, C8-HSL, C10-HSL, 3oxoC10-HSL, 3oxo-C12-HSL and 3OH-C12-HSL which are significantly different from those reported earlier in soybean symbionts.”

✓ located verbatim in the source · abstract, characters 166–388 · show in text ↑
e1

“A soybean nodule endophytic bacterium Bradyrhizobium sp. strain SR-6”

✓ located verbatim in the source · abstract, characters 0–68 · show in text ↑
Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

Purified AHL extracts significantly improved wheat seedling growth and root hair development under axenic conditions.

Treatment
Purified AHL extractse0
Outcome
seedling growth and root hair developmente0
Direction
improvede0
Setting
axenic conditionse0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Triticum aestivum
Triticum aestivum · TaxonRasbak · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Purified AHL extracts significantly improved wheat and soybean seedling growth and root hair development along with increased soybean nodulation under axenic conditions.”

✓ located verbatim in the source · abstract, characters 389–558 · show in text ↑
Intervention effectobservedoriginal resultpositivesignificant (as stated)measured

Claim · model-written summary

Purified AHL extracts significantly improved soybean seedling growth and root hair development under axenic conditions.

Taxon
soybeanGlycine maxe0
Treatment
Purified AHL extractse0
Outcome
seedling growth and root hair developmente0
Direction
improvede0
Setting
axenic conditionse0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“Purified AHL extracts significantly improved wheat and soybean seedling growth and root hair development along with increased soybean nodulation under axenic conditions.”

✓ located verbatim in the source · abstract, characters 389–558 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Purified AHL extracts increased soybean nodulation under axenic conditions.

Taxon
soybeanGlycine maxe0
Treatment
Purified AHL extractse0
Outcome
soybean nodulatione0
Direction
increasede0
Setting
axenic conditionse0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗

Verbatim

e0

“Purified AHL extracts significantly improved wheat and soybean seedling growth and root hair development along with increased soybean nodulation under axenic conditions.”

✓ located verbatim in the source · abstract, characters 389–558 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Nitrogenase and catalase enzyme activities in strain SR-6 were positively correlated.

Taxon
soybeanGlycine maxe1
Interactor
Bradyrhizobium sp. strain SR-6Bradyrhizobium sp.e1symbiont
Gene
nitrogenase and catalasee0
Outcome
enzyme activities of the strain SR-6e0
Direction
positive correlatione0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗
Bradyrhizobium sp.
Bradyrhizobium sp. · Interactor · picture of its genus (no picture of exactly this name)Louisa Howard - Dartmouth Electron Microscope Facility · Public domain · Wikimedia Commons ↗

Verbatim

e0

“A positive correlation was observed among in vivo nitrogenase and catalase enzyme activities of the strain SR-6.”

✓ located verbatim in the source · abstract, characters 559–671 · show in text ↑
e1

“A soybean nodule endophytic bacterium Bradyrhizobium sp. strain SR-6”

✓ located verbatim in the source · abstract, characters 0–68 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Catalase activity was localized within bacteroids attached to the peribacteroidal membrane.

Taxon
soybeanGlycine maxe1
Organ / stage
peribacteroidal membranee0
Interactor
Bradyrhizobium sp. strain SR-6Bradyrhizobium sp.e1symbiont
Gene
catalasee0
Outcome
catalase activity within the bacteroidse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗
Bradyrhizobium sp.
Bradyrhizobium sp. · Interactor · picture of its genus (no picture of exactly this name)Louisa Howard - Dartmouth Electron Microscope Facility · Public domain · Wikimedia Commons ↗

Verbatim

e0

“cytochemical localization of catalase activity within the bacteroids, specifically attached to the peribacteroidal membrane.”

✓ located verbatim in the source · abstract, characters 726–850 · show in text ↑
e1

“A soybean nodule endophytic bacterium Bradyrhizobium sp. strain SR-6”

✓ located verbatim in the source · abstract, characters 0–68 · show in text ↑
Observationobservedoriginal resultpositivemeasured

Claim · model-written summary

Root and nodule colonization demonstrated rhizosphere competence of SR-6.

Taxon
soybeanGlycine maxe1
Organ / stage
Root and nodulee0
Interactor
Bradyrhizobium sp. strain SR-6Bradyrhizobium sp.e1symbiont
Outcome
rhizosphere competence of SR-6e0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗
Bradyrhizobium sp.
Bradyrhizobium sp. · Interactor · picture of its genus (no picture of exactly this name)Louisa Howard - Dartmouth Electron Microscope Facility · Public domain · Wikimedia Commons ↗

Verbatim

e0

“Root and nodule colonization proved rhizosphere competence of SR-6.”

✓ located verbatim in the source · abstract, characters 851–918 · show in text ↑
e1

“A soybean nodule endophytic bacterium Bradyrhizobium sp. strain SR-6”

✓ located verbatim in the source · abstract, characters 0–68 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

SR-6 inoculation increased soybean shoot length by 13% versus non-inoculated plants.

Taxon
soybeanGlycine maxe0
Treatment
inoculation of SR-6e0
Interactor
Bradyrhizobium sp. strain SR-6Bradyrhizobium sp.e1symbiont
Outcome
shoot lengthe0
Direction
increasede0
Value
13%e0
Comparator
non-inoculated soybean plantse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗
Bradyrhizobium sp.
Bradyrhizobium sp. · Interactor · picture of its genus (no picture of exactly this name)Louisa Howard - Dartmouth Electron Microscope Facility · Public domain · Wikimedia Commons ↗

Verbatim

e0

“The inoculation of SR-6 resulted in increased shoot length (13%), plant dry matter (50%), grain weight (16%), seed yield (20%) and N-uptake (14%) as compared to non-inoculated soybean plants.”

✓ located verbatim in the source · abstract, characters 919–1110 · show in text ↑
e1

“A soybean nodule endophytic bacterium Bradyrhizobium sp. strain SR-6”

✓ located verbatim in the source · abstract, characters 0–68 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

SR-6 inoculation increased soybean plant dry matter by 50%.

Taxon
soybeanGlycine maxe0
Treatment
inoculation of SR-6e0
Interactor
Bradyrhizobium sp. strain SR-6Bradyrhizobium sp.e1symbiont
Outcome
plant dry mattere0
Direction
increasede0
Value
50%e0
Comparator
non-inoculated soybean plantse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗
Bradyrhizobium sp.
Bradyrhizobium sp. · Interactor · picture of its genus (no picture of exactly this name)Louisa Howard - Dartmouth Electron Microscope Facility · Public domain · Wikimedia Commons ↗

Verbatim

e0

“The inoculation of SR-6 resulted in increased shoot length (13%), plant dry matter (50%), grain weight (16%), seed yield (20%) and N-uptake (14%) as compared to non-inoculated soybean plants.”

✓ located verbatim in the source · abstract, characters 919–1110 · show in text ↑
e1

“A soybean nodule endophytic bacterium Bradyrhizobium sp. strain SR-6”

✓ located verbatim in the source · abstract, characters 0–68 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

SR-6 inoculation increased soybean grain weight by 16%.

Taxon
soybeanGlycine maxe0
Treatment
inoculation of SR-6e0
Interactor
Bradyrhizobium sp. strain SR-6Bradyrhizobium sp.e1symbiont
Outcome
grain weighte0
Direction
increasede0
Value
16%e0
Comparator
non-inoculated soybean plantse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗
Bradyrhizobium sp.
Bradyrhizobium sp. · Interactor · picture of its genus (no picture of exactly this name)Louisa Howard - Dartmouth Electron Microscope Facility · Public domain · Wikimedia Commons ↗

Verbatim

e0

“The inoculation of SR-6 resulted in increased shoot length (13%), plant dry matter (50%), grain weight (16%), seed yield (20%) and N-uptake (14%) as compared to non-inoculated soybean plants.”

✓ located verbatim in the source · abstract, characters 919–1110 · show in text ↑
e1

“A soybean nodule endophytic bacterium Bradyrhizobium sp. strain SR-6”

✓ located verbatim in the source · abstract, characters 0–68 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

SR-6 inoculation increased soybean seed yield by 20%.

Taxon
soybeanGlycine maxe0
Treatment
inoculation of SR-6e0
Interactor
Bradyrhizobium sp. strain SR-6Bradyrhizobium sp.e1symbiont
Outcome
seed yielde0
Direction
increasede0
Value
20%e0
Comparator
non-inoculated soybean plantse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗
Bradyrhizobium sp.
Bradyrhizobium sp. · Interactor · picture of its genus (no picture of exactly this name)Louisa Howard - Dartmouth Electron Microscope Facility · Public domain · Wikimedia Commons ↗

Verbatim

e0

“The inoculation of SR-6 resulted in increased shoot length (13%), plant dry matter (50%), grain weight (16%), seed yield (20%) and N-uptake (14%) as compared to non-inoculated soybean plants.”

✓ located verbatim in the source · abstract, characters 919–1110 · show in text ↑
e1

“A soybean nodule endophytic bacterium Bradyrhizobium sp. strain SR-6”

✓ located verbatim in the source · abstract, characters 0–68 · show in text ↑
Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

SR-6 inoculation increased soybean N-uptake by 14%.

Taxon
soybeanGlycine maxe0
Treatment
inoculation of SR-6e0
Interactor
Bradyrhizobium sp. strain SR-6Bradyrhizobium sp.e1symbiont
Outcome
N-uptakee0
Direction
increasede0
Value
14%e0
Comparator
non-inoculated soybean plantse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗
Bradyrhizobium sp.
Bradyrhizobium sp. · Interactor · picture of its genus (no picture of exactly this name)Louisa Howard - Dartmouth Electron Microscope Facility · Public domain · Wikimedia Commons ↗

Verbatim

e0

“The inoculation of SR-6 resulted in increased shoot length (13%), plant dry matter (50%), grain weight (16%), seed yield (20%) and N-uptake (14%) as compared to non-inoculated soybean plants.”

✓ located verbatim in the source · abstract, characters 919–1110 · show in text ↑
e1

“A soybean nodule endophytic bacterium Bradyrhizobium sp. strain SR-6”

✓ located verbatim in the source · abstract, characters 0–68 · show in text ↑
Recommendationauthor interpretationoriginal resultpositivebasis n/a

Claim · model-written summary

The authors suggest SR-6 could improve soybean growth and yield in the named sub-humid region of Pakistan.

Taxon
soybeanGlycine maxe0
Interactor
Bradyrhizobium sp. strain SR-6Bradyrhizobium sp.e1symbiont
Outcome
improve soybean growth and yielde0
Qualifier
has potentiale0
Setting
Azad Jammu and Kashmir region of Pakistane0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Glycine max
Glycine max · TaxonPublic domain · Wikimedia Commons ↗
Bradyrhizobium sp.
Bradyrhizobium sp. · Interactor · picture of its genus (no picture of exactly this name)Louisa Howard - Dartmouth Electron Microscope Facility · Public domain · Wikimedia Commons ↗

Verbatim

e0

“The symbiotic bacterium SR-6 has potential to improve soybean growth and yield in sub-humid climate of Azad Jammu and Kashmir region of Pakistan.”

✓ located verbatim in the source · abstract, characters 1111–1256 · show in text ↑
e1

“A soybean nodule endophytic bacterium Bradyrhizobium sp. strain SR-6”

✓ located verbatim in the source · abstract, characters 0–68 · show in text ↑

botanical · symbiosis · Glycine max (soybean)Positive and negative results

13 papers: 10 positive, 3 negative or no effect

9 papers in the same direction as this paper · 3 in the opposite direction

  1. negative
  2. negative
  3. negative

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botanical · growth · Glycine max (soybean)Positive and negative results

115 papers: 79 positive, 36 negative or no effect

78 papers in the same direction as this paper · 36 in the opposite direction

  1. negative
  2. no effect
  3. negative

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botanical · growth · Triticum aestivum (wheat)Positive and negative results

435 papers: 206 positive, 229 negative or no effect

205 papers in the same direction as this paper · 228 in the opposite direction · 1 reporting no difference from an alternative

  1. negative
  2. no effect
  3. negative

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Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.