Paper · 2016 · The ISME Journal

Influence of phylogenetic conservatism and trait convergence on the interactions between fungal root endophytes and plants

Sevda Haghi Kia; Kyriaki Glynou; Thomas Nau; et al.

10
claims
18
verbatim quotes
71
citations
2
research areas
✓
Open access

Abstract

Plants associate through their roots with fungal assemblages that impact their abundance and productivity. Non-mycorrhizal endophytes constitute an important component of such fungal diversity, but their implication in ecosystem processes is little known. Using a selection of 128 root-endophytic strains, we defined functional groups based on their traits and plant interactions with potential to predict community assembly and symbiotic association processes. In vitro tests of the strains' interactions with Arabidopsis thaliana, Microthlaspi erraticum and Hordeum vulgare showed a net negative effect of fungal colonization on plant growth. The effects partly depended on the phylogenetic affiliation of strains, but also varied considerably depending on the plant-strain combination. The variation was partly explained by fungal traits shared by different lineages, like growth rates or melanization. The origin of strains also affected their symbioses, with endophytes isolated from Microthlaspi spp. populations being more detrimental to M. erraticum than strains from other sources. Our findings suggest that plant-endophyte associations are subject to local processes of selection, in which particular combinations of symbionts are favored across landscapes. We also show that different common endophytic taxa have differential sets of traits found to affect interactions, hinting to a functional complementarity that can explain their frequent co-existence in natural communities.

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The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 10

Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Fungal colonization had a net negative effect on Arabidopsis thaliana growth in vitro.

Taxon
Arabidopsis thalianaArabidopsis thalianae0
Treatment
fungal colonizatione0
Interactor
root-endophytic strainse1symbiont
Outcome
plant growthe0
Direction
negativee0
Setting
In vitroe0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“In vitro tests of the strains' interactions with Arabidopsis thaliana, Microthlaspi erraticum and Hordeum vulgare showed a net negative effect of fungal colonization on plant growth”

✓ located verbatim in the source · abstract, characters 462–643 · show in text ↑
e1

“Using a selection of 128 root-endophytic strains”

✓ located verbatim in the source · abstract, characters 256–304 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Fungal colonization had a net negative effect on Microthlaspi erraticum growth in vitro.

Taxon
Microthlaspi erraticumMicrothlaspi erraticume0
Treatment
fungal colonizatione0
Interactor
root-endophytic strainse1symbiont
Outcome
plant growthe0
Direction
negativee0
Setting
In vitroe0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Microthlaspi erraticum
Microthlaspi erraticum · TaxonЮрий Данилевский (Yuriy Danilevsky) · CC BY 4.0 · iNaturalist ↗

Verbatim

e0

“In vitro tests of the strains' interactions with Arabidopsis thaliana, Microthlaspi erraticum and Hordeum vulgare showed a net negative effect of fungal colonization on plant growth”

✓ located verbatim in the source · abstract, characters 462–643 · show in text ↑
e1

“Using a selection of 128 root-endophytic strains”

✓ located verbatim in the source · abstract, characters 256–304 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Fungal colonization had a net negative effect on Hordeum vulgare growth in vitro.

Taxon
Hordeum vulgareHordeum vulgaree0
Treatment
fungal colonizatione0
Interactor
root-endophytic strainse1symbiont
Outcome
plant growthe0
Direction
negativee0
Setting
In vitroe0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Hordeum vulgare
Hordeum vulgare · TaxonJackyM59 · CC BY-SA 4.0 · Wikimedia Commons ↗

Verbatim

e0

“In vitro tests of the strains' interactions with Arabidopsis thaliana, Microthlaspi erraticum and Hordeum vulgare showed a net negative effect of fungal colonization on plant growth”

✓ located verbatim in the source · abstract, characters 462–643 · show in text ↑
e1

“Using a selection of 128 root-endophytic strains”

✓ located verbatim in the source · abstract, characters 256–304 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

The effects of endophytes on plants partly depended on the phylogenetic affiliation of the strains.

Taxon
Arabidopsis thaliana, Microthlaspi erraticum and Hordeum vulgareArabidopsis thalianaHordeum vulgareMicrothlaspi erraticume0
Treatment
phylogenetic affiliation of strainse2
Outcome
effectse2

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗
Hordeum vulgare
Hordeum vulgare · TaxonJackyM59 · CC BY-SA 4.0 · Wikimedia Commons ↗
Microthlaspi erraticum
Microthlaspi erraticum · TaxonЮрий Данилевский (Yuriy Danilevsky) · CC BY 4.0 · iNaturalist ↗

Verbatim

e0

“In vitro tests of the strains' interactions with Arabidopsis thaliana, Microthlaspi erraticum and Hordeum vulgare”

✓ located verbatim in the source · abstract, characters 462–575 · show in text ↑
e2

“The effects partly depended on the phylogenetic affiliation of strains”

✓ located verbatim in the source · abstract, characters 645–715 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

The effects of endophytes on plants varied considerably with the plant-strain combination.

Taxon
Arabidopsis thaliana, Microthlaspi erraticum and Hordeum vulgareArabidopsis thalianaHordeum vulgareMicrothlaspi erraticume0
Treatment
plant-strain combinatione2
Outcome
effectse2

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗
Hordeum vulgare
Hordeum vulgare · TaxonJackyM59 · CC BY-SA 4.0 · Wikimedia Commons ↗
Microthlaspi erraticum
Microthlaspi erraticum · TaxonЮрий Данилевский (Yuriy Danilevsky) · CC BY 4.0 · iNaturalist ↗

Verbatim

e0

“In vitro tests of the strains' interactions with Arabidopsis thaliana, Microthlaspi erraticum and Hordeum vulgare”

✓ located verbatim in the source · abstract, characters 462–575 · show in text ↑
e2

“The effects partly depended on the phylogenetic affiliation of strains, but also varied considerably depending on the plant-strain combination”

✓ located verbatim in the source · abstract, characters 645–787 · show in text ↑
Associationobservedoriginal resultmeasured

Claim · model-written summary

Variation in the effects was partly explained by fungal traits shared by different lineages, such as growth rates or melanization.

Taxon
Arabidopsis thaliana, Microthlaspi erraticum and Hordeum vulgareArabidopsis thalianaHordeum vulgareMicrothlaspi erraticume0
Treatment
fungal traits shared by different lineagese3
Outcome
variatione3
Qualifier
growth rates or melanizatione3

Not reportedDirection

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Arabidopsis thaliana
Arabidopsis thaliana · TaxonOriginal uploader was Brona at en.wikipedia . User:Roepers at nl.wikipedia · CC BY-SA 3.0 · Wikimedia Commons ↗
Hordeum vulgare
Hordeum vulgare · TaxonJackyM59 · CC BY-SA 4.0 · Wikimedia Commons ↗
Microthlaspi erraticum
Microthlaspi erraticum · TaxonЮрий Данилевский (Yuriy Danilevsky) · CC BY 4.0 · iNaturalist ↗

Verbatim

e0

“In vitro tests of the strains' interactions with Arabidopsis thaliana, Microthlaspi erraticum and Hordeum vulgare”

✓ located verbatim in the source · abstract, characters 462–575 · show in text ↑
e3

“The variation was partly explained by fungal traits shared by different lineages, like growth rates or melanization”

✓ located verbatim in the source · abstract, characters 789–904 · show in text ↑
Intervention effectobservedoriginal resultnegativemeasured

Claim · model-written summary

Endophytes isolated from Microthlaspi populations were more detrimental to M. erraticum than strains from other sources.

Taxon
M. erraticumMicrothlaspi erraticume4
Treatment
endophytes isolated from Microthlaspi spp. populationse4
Interactor
endophytese4symbiont
Outcome
symbiosese4
Direction
more detrimentale4
Comparator
strains from other sourcese4

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Microthlaspi erraticum
Microthlaspi erraticum · TaxonЮрий Данилевский (Yuriy Danilevsky) · CC BY 4.0 · iNaturalist ↗

Verbatim

e4

“The origin of strains also affected their symbioses, with endophytes isolated from Microthlaspi spp. populations being more detrimental to M. erraticum than strains from other sources”

✓ located verbatim in the source · abstract, characters 906–1089 · show in text ↑
Mechanismauthor interpretationoriginal resultbasis n/a

Claim · model-written summary

Local selection processes may favour particular combinations of symbionts across landscapes, shaping plant-endophyte associations.

Taxon
plante5
Interactor
symbiontse5symbiont
Outcome
associationse5
Qualifier
local processes of selectione5

Verbatim

e5

“Our findings suggest that plant-endophyte associations are subject to local processes of selection, in which particular combinations of symbionts are favored across landscapes”

✓ located verbatim in the source · abstract, characters 1091–1266 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Different common endophytic taxa have differential sets of traits that affect plant interactions.

Taxon
plantsViridiplantaet0
Interactor
different common endophytic taxae6symbiont
Outcome
differential sets of traits found to affect interactionse6

Verbatim

t0

“fungal root endophytes and plants”

✓ located verbatim in the source · title, characters 89–122 · show in text ↑
e6

“We also show that different common endophytic taxa have differential sets of traits found to affect interactions”

✓ located verbatim in the source · abstract, characters 1268–1380 · show in text ↑
Mechanismhypothesisoriginal resultbasis n/a

Claim · model-written summary

Functional complementarity may explain the frequent co-existence of common endophytic taxa in natural communities.

Taxon
plantsViridiplantaet0
Interactor
different common endophytic taxae6symbiont
Outcome
frequent co-existencee6
Qualifier
functional complementaritye6

Verbatim

t0

“fungal root endophytes and plants”

✓ located verbatim in the source · title, characters 89–122 · show in text ↑
e6

“We also show that different common endophytic taxa have differential sets of traits found to affect interactions, hinting to a functional complementarity that can explain their frequent co-existence in natural communities”

✓ located verbatim in the source · abstract, characters 1268–1489 · show in text ↑

infection · growth · Arabidopsis thaliana (thale cress)Positive and negative results

9 papers: 1 positive, 8 negative or no effect

7 papers in the same direction as this paper · 1 in the opposite direction

  1. positive
  2. no effect
  3. negative

5 papers more in this group

See all 9 papers →

infection · growth · Hordeum vulgare (barley)Positive and negative results

16 papers: 2 positive, 14 negative or no effect

13 papers in the same direction as this paper · 2 in the opposite direction

  1. positive
  2. positive
  3. negative

12 papers more in this group

See all 16 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.