Paper · 2017 · New Phytologist

Comparative genomics reveals cotton‐specific virulence factors in flexible genomic regions in Verticillium dahliae and evidence of horizontal gene transfer from Fusarium

Jie‐Yin Chen; Chun Liu; Yue‐Jing Gui; et al.

3
claims
3
verbatim quotes
113
citations
2
research areas
✓
Open access · cc-by

Abstract

Verticillium dahliae isolates are most virulent on the host from which they were originally isolated. Mechanisms underlying these dominant host adaptations are currently unknown. We sequenced the genome of V. dahliae Vd991, which is highly virulent on its original host, cotton, and performed comparisons with the reference genomes of JR2 (from tomato) and VdLs.17 (from lettuce). Pathogenicity-related factor prediction, orthology and multigene family classification, transcriptome analyses, phylogenetic analyses, and pathogenicity experiments were performed. The Vd991 genome harbored several exclusive, lineage-specific (LS) genes within LS regions (LSRs). Deletion mutants of the seven genes within one LSR (G-LSR2) in Vd991 were less virulent only on cotton. Integration of G-LSR2 genes individually into JR2 and VdLs.17 resulted in significantly enhanced virulence on cotton but did not affect virulence on tomato or lettuce. Transcription levels of the seven LS genes in Vd991 were higher during the early stages of cotton infection, as compared with other hosts. Phylogenetic analyses suggested that G-LSR2 was acquired from Fusarium oxysporum f. sp. vasinfectum through horizontal gene transfer. Our results provide evidence that horizontal gene transfer from Fusarium to Vd991 contributed significantly to its adaptation to cotton and may represent a significant mechanism in the evolution of an asexual plant pathogen.

Abstract from the paper’s OpenAlex record; open copy licensed cc-by. Read at the source ↗

The text the model read, with the source record’s inline markup (italics, sub- and superscripts) rendered and its character entities decoded; quote offsets refer to the raw text.

Claims 3

Intervention effectobservedoriginal resultpositivemeasured

Claim · model-written summary

Deleting seven G-LSR2 genes reduced Verticillium virulence on cotton.

Treatment
Deletion mutants of the seven genes within one LSR (G-LSR2)e0
Interactor
Vd991e0pathogen
Outcome
virulente0
Direction
lesse0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Gossypium hirsutum
Gossypium hirsutum · TaxonChriKo · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Deletion mutants of the seven genes within one LSR (G-LSR2) in Vd991 were less virulent only on cotton.”

✓ located verbatim in the source · abstract, characters 661–764 · show in text ↑
Intervention effectobservedoriginal resultnegativesignificant (as stated)measured

Claim · model-written summary

Introducing G-LSR2 genes increased virulence on cotton but not tomato or lettuce.

Treatment
Integration of G-LSR2 genes individually into JR2 and VdLs.17e0
Outcome
virulencee0
Direction
enhancede0

Not reportedComparator

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Gossypium hirsutum
Gossypium hirsutum · TaxonChriKo · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Integration of G-LSR2 genes individually into JR2 and VdLs.17 resulted in significantly enhanced virulence on cotton but did not affect virulence on tomato or lettuce.”

✓ located verbatim in the source · abstract, characters 765–932 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Vd991 LS genes were more highly transcribed during early cotton infection than infection of other hosts.

Outcome
Transcription levelse0
Direction
highere0
Comparator
other hostse0

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Gossypium hirsutum
Gossypium hirsutum · TaxonChriKo · CC BY-SA 3.0 · Wikimedia Commons ↗

Verbatim

e0

“Transcription levels of the seven LS genes in Vd991 were higher during the early stages of cotton infection, as compared with other hosts.”

✓ located verbatim in the source · abstract, characters 933–1071 · show in text ↑

loss of function · disease · Gossypium hirsutum (cotton)Positive and negative results

84 papers: 24 positive, 60 negative or no effect

23 papers in the same direction as this paper · 60 in the opposite direction

  1. no effect
  2. negative
  3. negative

80 papers more in this group

See all 84 papers →

Claims are grouped by organism, treatment and what was measured or targeted. A paper counts as positive when any of its claims in the group is positive.