Paper · 2017 · Journal of Natural Products

Methodology for the Absolute Configuration Determination of Epoxythymols Using the Constituents of Ageratina glabrata

Héctor M. Arreaga-González; Julio C. Pardo-Novoa; Rosa E. del Río; et al.

8
claims
16
verbatim quotes
18
citations
1
research areas
—
Not open access

Abstract

A methodology to determine the enantiomeric excess and the absolute configuration (AC) of natural epoxythymols was developed and tested using five constituents of Ageratina glabrata. The methodology is based on enantiomeric purity determination employing 1,1'-bi-2-naphthol (BINOL) as a chiral solvating agent combined with vibrational circular dichroism (VCD) measurements and calculations. The conformational searching included an extensive Monte Carlo protocol that considered the rotational barriers to cover the whole conformational spaces. (+)-(8S)-10-Benzoyloxy-6-hydroxy-8,9-epoxythymol isobutyrate (1), (+)-(8S)-10-acetoxy-6-methoxy-8,9-epoxythymol isobutyrate (4), and (+)-(8S)-10-benzoyloxy-6-methoxy-8,9-epoxythymol isobutyrate (5) were isolated as enantiomerically pure constituents, while 10-isobutyryloxy-8,9-epoxythymol isobutyrate (2) was obtained as a 75:25 (8S)/(8R) scalemic mixture. In the case of 10-benzoyloxy-8,9-epoxythymol isobutyrate (3), the BINOL methodology revealed a 56:44 scalemic mixture and the VCD measurement was beyond the limit of sensitivity since the enantiomeric excess is only 12%. The racemization process of epoxythymol derivatives was studied using compound 1 and allowed the clarification of some stereochemical aspects of epoxythymol derivatives since their ACs have been scarcely analyzed and a particular behavior in their specific rotations was detected. In more than 30 oxygenated thymol derivatives, including some epoxythymols, the reported specific rotation values fluctuate from -1.6 to +1.4 passing through zero, suggesting the presence of scalemic and close to racemic mixtures, since enantiomerically pure natural constituents showed positive or negative specific rotations greater than 10 units.

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Claims 8

Observationobservedoriginal resultmeasured

Claim · model-written summary

Three epoxythymol constituents were isolated as enantiomerically pure constituents.

Taxon
Ageratina glabrataAgeratina glabratae1
Outcome
were isolated as enantiomerically pure constituentse2

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Ageratina glabrata
Ageratina glabrata · TaxonGaiacoyote · CC0 · Wikimedia Commons ↗

Verbatim

e1

“A methodology to determine the enantiomeric excess and the absolute configuration (AC) of natural epoxythymols was developed and tested using five constituents of Ageratina glabrata”

✓ located verbatim in the source · abstract, characters 0–181 · show in text ↑
e2

“(+)-(8S)-10-Benzoyloxy-6-hydroxy-8,9-epoxythymol isobutyrate (1), (+)-(8S)-10-acetoxy-6-methoxy-8,9-epoxythymol isobutyrate (4), and (+)-(8S)-10-benzoyloxy-6-methoxy-8,9-epoxythymol isobutyrate (5) were isolated as enantiomerically pure constituents”

✓ located verbatim in the source · abstract, characters 546–795 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Compound 2 was obtained as a 75:25 (8S)/(8R) scalemic mixture.

Taxon
Ageratina glabrataAgeratina glabratae1
Outcome
scalemic mixturee2
Value
75:25e2
Qualifier
10-isobutyryloxy-8,9-epoxythymol isobutyrate (2)e2

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Ageratina glabrata
Ageratina glabrata · TaxonGaiacoyote · CC0 · Wikimedia Commons ↗

Verbatim

e1

“A methodology to determine the enantiomeric excess and the absolute configuration (AC) of natural epoxythymols was developed and tested using five constituents of Ageratina glabrata”

✓ located verbatim in the source · abstract, characters 0–181 · show in text ↑
e2

“10-isobutyryloxy-8,9-epoxythymol isobutyrate (2) was obtained as a 75:25 (8S)/(8R) scalemic mixture”

✓ located verbatim in the source · abstract, characters 803–902 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Compound 3 was a 56:44 scalemic mixture by the BINOL methodology.

Taxon
Ageratina glabrataAgeratina glabratae1
Outcome
scalemic mixturee2
Value
56:44e2
Qualifier
10-benzoyloxy-8,9-epoxythymol isobutyrate (3)e2

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Ageratina glabrata
Ageratina glabrata · TaxonGaiacoyote · CC0 · Wikimedia Commons ↗

Verbatim

e1

“A methodology to determine the enantiomeric excess and the absolute configuration (AC) of natural epoxythymols was developed and tested using five constituents of Ageratina glabrata”

✓ located verbatim in the source · abstract, characters 0–181 · show in text ↑
e2

“In the case of 10-benzoyloxy-8,9-epoxythymol isobutyrate (3), the BINOL methodology revealed a 56:44 scalemic mixture and the VCD measurement was beyond the limit of sensitivity since the enantiomeric excess is only 12%”

✓ located verbatim in the source · abstract, characters 904–1123 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Compound 3 had an enantiomeric excess of only 12%, beyond the VCD sensitivity limit.

Taxon
Ageratina glabrataAgeratina glabratae1
Outcome
enantiomeric excesse2
Value
12%e2
Qualifier
the VCD measurement was beyond the limit of sensitivitye2

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Ageratina glabrata
Ageratina glabrata · TaxonGaiacoyote · CC0 · Wikimedia Commons ↗

Verbatim

e1

“A methodology to determine the enantiomeric excess and the absolute configuration (AC) of natural epoxythymols was developed and tested using five constituents of Ageratina glabrata”

✓ located verbatim in the source · abstract, characters 0–181 · show in text ↑
e2

“In the case of 10-benzoyloxy-8,9-epoxythymol isobutyrate (3), the BINOL methodology revealed a 56:44 scalemic mixture and the VCD measurement was beyond the limit of sensitivity since the enantiomeric excess is only 12%”

✓ located verbatim in the source · abstract, characters 904–1123 · show in text ↑
Observationauthor interpretationoriginal resultmeasured

Claim · model-written summary

Racemization of compound 1 clarified some stereochemical aspects of epoxythymol derivatives.

Taxon
Ageratina glabrataAgeratina glabratae1
Outcome
clarification of some stereochemical aspects of epoxythymol derivativese2

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Ageratina glabrata
Ageratina glabrata · TaxonGaiacoyote · CC0 · Wikimedia Commons ↗

Verbatim

e1

“A methodology to determine the enantiomeric excess and the absolute configuration (AC) of natural epoxythymols was developed and tested using five constituents of Ageratina glabrata”

✓ located verbatim in the source · abstract, characters 0–181 · show in text ↑
e2

“The racemization process of epoxythymol derivatives was studied using compound 1 and allowed the clarification of some stereochemical aspects of epoxythymol derivatives”

✓ located verbatim in the source · abstract, characters 1125–1293 · show in text ↑
Observationobservedoriginal resultmeasured

Claim · model-written summary

Epoxythymol derivatives showed a particular behavior in their specific rotations.

Taxon
Ageratina glabrataAgeratina glabratae1
Outcome
specific rotationse2
Qualifier
a particular behaviore2

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Ageratina glabrata
Ageratina glabrata · TaxonGaiacoyote · CC0 · Wikimedia Commons ↗

Verbatim

e1

“A methodology to determine the enantiomeric excess and the absolute configuration (AC) of natural epoxythymols was developed and tested using five constituents of Ageratina glabrata”

✓ located verbatim in the source · abstract, characters 0–181 · show in text ↑
e2

“since their ACs have been scarcely analyzed and a particular behavior in their specific rotations was detected”

✓ located verbatim in the source · abstract, characters 1294–1404 · show in text ↑
Observationobservedreview summarybasis n/a

Claim · model-written summary

Reported specific rotations of more than 30 oxygenated thymol derivatives fluctuate from -1.6 to +1.4 through zero.

Taxon
Ageratina glabrataAgeratina glabratae1
Outcome
reported specific rotation valuese2
Value
from -1.6 to +1.4e2

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Ageratina glabrata
Ageratina glabrata · TaxonGaiacoyote · CC0 · Wikimedia Commons ↗

Verbatim

e1

“A methodology to determine the enantiomeric excess and the absolute configuration (AC) of natural epoxythymols was developed and tested using five constituents of Ageratina glabrata”

✓ located verbatim in the source · abstract, characters 0–181 · show in text ↑
e2

“In more than 30 oxygenated thymol derivatives, including some epoxythymols, the reported specific rotation values fluctuate from -1.6 to +1.4 passing through zero”

✓ located verbatim in the source · abstract, characters 1406–1568 · show in text ↑
Observationobservedreview summarybasis n/a

Claim · model-written summary

Enantiomerically pure natural constituents have specific rotations greater than 10 units.

Taxon
Ageratina glabrataAgeratina glabratae1
Outcome
specific rotationse2
Value
greater than 10 unitse2

Organisms pictured · Representative pictures of the matched species, not figures from the paper.

Ageratina glabrata
Ageratina glabrata · TaxonGaiacoyote · CC0 · Wikimedia Commons ↗

Verbatim

e1

“A methodology to determine the enantiomeric excess and the absolute configuration (AC) of natural epoxythymols was developed and tested using five constituents of Ageratina glabrata”

✓ located verbatim in the source · abstract, characters 0–181 · show in text ↑
e2

“enantiomerically pure natural constituents showed positive or negative specific rotations greater than 10 units”

✓ located verbatim in the source · abstract, characters 1643–1754 · show in text ↑